1VRB
Crystal structure of Putative asparaginyl hydroxylase (2636534) from Bacillus subtilis at 2.60 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1vrba1 | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Asparaginyl hydroxylase-like | Putative asparaginyl hydroxylase YxbC | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
B | d1vrbb_ | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Asparaginyl hydroxylase-like | Putative asparaginyl hydroxylase YxbC | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
C | d1vrbc_ | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Asparaginyl hydroxylase-like | Putative asparaginyl hydroxylase YxbC | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
D | d1vrbd_ | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Asparaginyl hydroxylase-like | Putative asparaginyl hydroxylase YxbC | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Asparaginyl hydroxylase-like | 8020322 | 4002145 | SCOP2 (2021-05-27) |
A | SCOP2 Superfamily | Clavaminate synthase-like | 8032702 | 3001848 | SCOP2 (2021-05-27) |
B | SCOP2B Superfamily | Clavaminate synthase-like | 8032702 | 3001848 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Clavaminate synthase-like | 8032702 | 3001848 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Clavaminate synthase-like | 8032702 | 3001848 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08007 | e1vrbA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF08007 | ECOD (1.6) |
B | PF08007 | e1vrbB1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF08007 | ECOD (1.6) |
C | PF08007 | e1vrbC1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF08007 | ECOD (1.6) |
D | PF08007 | e1vrbD1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF08007 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
A | 6.10.280.40 | Special | Helix non-globular | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
B | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
B | 6.10.280.40 | Special | Helix non-globular | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
C | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
C | 6.10.280.40 | Special | Helix non-globular | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
D | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
D | 6.10.280.40 | Special | Helix non-globular | Methane Monooxygenase Hydroxylase | Chain G, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08007 | JmjC domain (JmjC_2) | JmjC domain | This entry includes proteins with a JmjC domain that belong to the cupin superfamily, including Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 [1], Ribosomal oxygenase 1/2 [2,3], and 50S ribosomal protein L16 3-hydroxylase fro ... | Domain |