1U78
Structure of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d1u78a1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | Homeodomain-like | Recombinase DNA-binding domain | Transposase tc3a1-65 | (Caenorhabditis elegans ) [TaxId: 6239 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2 Family | Recombinase DNA-binding domain-like | 8003600 | 4000311 | SCOP2 (2022-06-29) |
C [auth A] | SCOP2 Family | Recombinase DNA-binding domain-like | 8003601 | 4000311 | SCOP2 (2022-06-29) |
C [auth A] | SCOP2 Superfamily | Homeodomain-like | 8044640 | 3000001 | SCOP2 (2022-06-29) |
C [auth A] | SCOP2 Superfamily | Homeodomain-like | 8044641 | 3000001 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | PF11427 | e1u78A1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF11427 | ECOD (1.6) |
C [auth A] | PF21517 | e1u78A2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF21517 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 1.10.10.60 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Homeodomain-like | CATH (4.3.0) |
C [auth A] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF21517 | Transposable element Tc3 transposase, HTH (HTH_Tnp_Tc3_2_like) | Transposable element Tc3 transposase, HTH | Tc3 is transposase with a specific DNA-binding domain. It binds specifically to the terminal nucleotides of the TC3 inverted repeat and acts by making double strand breaks at the ends of TC3 element. It has two DNA-binding domains at the N-terminal, ... | Domain |
C [auth A] | PF11427 | Tc3 transposase (HTH_Tnp_Tc3_1) | Tc3 transposase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B] | 26-MER | - | - | - |
B [auth C] | 26-MER | - | - | - |
C [auth A] | transposable element tc3 transposase |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
C [auth A] | IPR009057 | Homedomain-like superfamily | Homologous Superfamily |
C [auth A] | IPR025898 | Tc3 transposase, DNA binding domain | Domain |
C [auth A] | IPR048703 | Transposable element Tc3 transposase-like, DNA-binding HTH domain | Domain |
C [auth A] | IPR052338 | Transposase_5 | Family |
C [auth A] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
C [auth A] | IPR038717 | Tc1-like transposase, DDE domain | Domain |