1RC8
T4 Polynucleotide Kinase bound to 5'-GTCAC-3' ssDNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | d1rc8a2 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Nucleotide and nucleoside kinases | Polynucleotide kinase, kinase domain | (Tequatrovirus T4 ) [TaxId: 10665 ], | SCOPe (2.08) |
B [auth A] | d1rc8a1 | Alpha and beta proteins (a/b) | HAD-like | HAD-like | phosphatase domain of polynucleotide kinase | Polynucleotide kinase, phosphatase domain | (Tequatrovirus T4 ) [TaxId: 10665 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth A] | SCOP2B Superfamily | HAD-like | 8019148 | 3001890 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | P-loop nucleotide/nucleoside kinase-like | 8019145 | 3002021 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth A] | AAA_33 | e1rc8A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_33 | ECOD (1.6) |
B [auth A] | PNK3P | e1rc8A2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: HAD-like | F: PNK3P | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B [auth A] | 3.40.50.1000 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HAD superfamily/HAD-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A] | PF13671 | AAA domain (AAA_33) | AAA domain | This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth A] | IPR044493 | Polynucleotide kinase PNKP, C-terminal phosphatase domain | Domain |
B [auth A] | IPR036412 | HAD-like superfamily | Homologous Superfamily |
B [auth A] | IPR023214 | HAD superfamily | Homologous Superfamily |
B [auth A] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |