1OQD
Crystal structure of sTALL-1 and BCMA
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | TNF-like | 8040716 | 3000061 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | TNF receptor-like | 8044166 | 3000971 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | TNF receptor-like | 8044166 | 3000971 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | TNF receptor-like | 8044166 | 3000971 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | TNF receptor-like | 8044166 | 3000971 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | TNF receptor-like | 8044166 | 3000971 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | TNF receptor-like | 8044166 | 3000971 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | TNF receptor-like | 8044166 | 3000971 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | TNF | e1oqdC1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
F | TNF | e1oqdF1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
G | TNF | e1oqdG1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
A | TNF | e1oqdA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
B | TNF | e1oqdB1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
D | TNF | e1oqdD1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
E | TNF | e1oqdE1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
H | TNF | e1oqdH1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
I | TNF | e1oqdI1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
J | TNF | e1oqdJ1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
O | BCMA-Tall_bind | e1oqdO1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: BCMA-Tall_bind | ECOD (1.6) |
P | BCMA-Tall_bind | e1oqdP1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: BCMA-Tall_bind | ECOD (1.6) |
R | BCMA-Tall_bind | e1oqdR1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: BCMA-Tall_bind | ECOD (1.6) |
K | BCMA-Tall_bind | e1oqdK1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: BCMA-Tall_bind | ECOD (1.6) |
L | BCMA-Tall_bind | e1oqdL1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: BCMA-Tall_bind | ECOD (1.6) |
M | BCMA-Tall_bind | e1oqdM1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: BCMA-Tall_bind | ECOD (1.6) |
N | BCMA-Tall_bind | e1oqdN1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: BCMA-Tall_bind | ECOD (1.6) |
Q | BCMA-Tall_bind | e1oqdQ1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: BCMA-Tall_bind | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
F | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
G | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
A | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
E | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
H | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
I | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
J | 2.60.120.40 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain | |
PF09257 | BCMA, TALL-1 binding (BCMA-Tall_bind) | BCMA, TALL-1 binding | Members of this family, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR051748 | Tumor Necrosis Factor Ligand Superfamily | Family | |
IPR006052 | Tumour necrosis factor domain | Domain | |
IPR022320 | Tumour necrosis factor receptor 17 | Family | |
IPR015337 | BCMA, TALL-1 binding | Domain | |
IPR043521 | Tumor necrosis factor receptor 13C/17 | Family |