Annotations: 1OQD

Crystal structure of sTALL-1 and BCMA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
R	d1oqdr_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 17, BCMA	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
Q	d1oqdq_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 17, BCMA	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
P	d1oqdp_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 17, BCMA	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
O	d1oqdo_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 17, BCMA	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
N	d1oqdn_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 17, BCMA	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
M	d1oqdm_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 17, BCMA	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
L	d1oqdl_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 17, BCMA	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K	d1oqdk_	Small proteins	TNF receptor-like	TNF receptor-like	BAFF receptor-like	Tumor necrosis factor receptor superfamily member 17, BCMA	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
J	d1oqdj_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d1oqdi_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d1oqdh_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d1oqdg_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d1oqdf_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d1oqde_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1oqdd_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1oqdc_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1oqdb_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1oqda_	All beta proteins	TNF-like	TNF-like	TNF-like	Soluble part of TALL-1, sTALL-1 (BAFF)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
R	SCOP2B Superfamily	TNF receptor-like	8044166	3000971	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	TNF receptor-like	8044166	3000971	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	TNF receptor-like	8044166	3000971	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	TNF receptor-like	8044166	3000971	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TNF receptor-like	8044166	3000971	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	TNF receptor-like	8044166	3000971	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	TNF receptor-like	8044166	3000971	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TNF-like	8040716	3000061	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R		e1oqdR1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
Q		e1oqdQ1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
P		e1oqdP1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
O		e1oqdO1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
N		e1oqdN1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
M		e1oqdM1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
L		e1oqdL1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
K		e1oqdK1	A: alpha arrays	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: C-terminal subdomain in Lon-related proteases catalytic domains	F:	ECOD (v295.2)
J	Copper-bind	e1oqdJ1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
I	Copper-bind	e1oqdI1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
H	Copper-bind	e1oqdH1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
G	Copper-bind	e1oqdG1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
F	Copper-bind	e1oqdF1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
E	Copper-bind	e1oqdE1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
D	Copper-bind	e1oqdD1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
C	Copper-bind	e1oqdC1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
B	Copper-bind	e1oqdB1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)
A	Copper-bind	e1oqdA1	A: alpha arrays	X: Phage tail fiber protein trimerization domain	H: Phage tail fiber protein trimerization domain	T: Phage tail fiber protein trimerization domain	F: Copper-bind	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
I	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
H	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
G	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
F	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
B	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.120.40	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K, L, M, N, O K, L, M, N, O, P, Q, R	PF09257	BCMA, TALL-1 binding (BCMA-Tall_bind)	BCMA, TALL-1 binding	Members of this family, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF00229	TNF(Tumour Necrosis Factor) family (TNF)	TNF(Tumour Necrosis Factor) family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K, L, M, N, O K, L, M, N, O, P, Q, R	Tumor necrosis factor receptor superfamily member 17	molecular transducer activity signaling receptor activity	response to stimulus immune response immune system process adaptive immune response cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation cellular process signal transduction cell communication cell surface receptor signaling pathway response to cytokine response to stimulus immune response immune system process adaptive immune response cellular response to stimulus regulation of biological process regulation of cellular process signaling biological regulation cellular process signal transduction cell communication cell surface receptor signaling pathway response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus response to tumor necrosis factor	cellular anatomical structure endomembrane system cell periphery plasma membrane membrane
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Tumor necrosis factor ligand superfamily member 13B, soluble form	protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity cytokine receptor binding tumor necrosis factor receptor superfamily binding tumor necrosis factor receptor binding	developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development cellular process leukocyte differentiation response to stimulus immune response cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling biological regulation response to cytokine cytokine-mediated signaling pathway cell communication response to peptide cellular response to tumor necrosis factor response to chemical tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus signal transduction response to tumor necrosis factor multicellular organismal-level homeostasis leukocyte homeostasis homeostatic process homeostasis of number of cells lymphocyte homeostasis positive regulation of cell population proliferation positive regulation of B cell proliferation regulation of leukocyte activation positive regulation of biological process regulation of cell activation leukocyte proliferation positive regulation of lymphocyte activation positive regulation of cell activation regulation of B cell proliferation lymphocyte proliferation regulation of B cell activation positive regulation of leukocyte activation positive regulation of mononuclear cell proliferation regulation of immune system process regulation of multicellular organismal process positive regulation of immune system process positive regulation of cellular process regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation positive regulation of lymphocyte proliferation B cell proliferation positive regulation of B cell activation regulation of cell population proliferation mononuclear cell proliferation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation positive regulation of multicellular organismal process regulation of lymphocyte activation	cellular anatomical structure membrane extracellular region intracellular anatomical structure perinuclear region of cytoplasm cytoplasm cell periphery plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR022320	Tumour necrosis factor receptor 17	Family
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR015337	BCMA, TALL-1 binding	Domain
K, L, M, N, O K, L, M, N, O, P, Q, R	IPR043521	Tumor necrosis factor receptor 13C/17	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR008983	Tumour necrosis factor-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR051748	Tumor Necrosis Factor Ligand Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR006052	Tumour necrosis factor domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
K, L, M, N, O K, L, M, N, O, P, Q, R	: Q02223	gastric carcinoma cancer exocrine pancreatic carcinoma hepatocellular carcinoma malignant colon neoplasm osteosarcoma Relapse multiple myeloma tuberculosis cutaneous lupus erythematosus gastric cancer interstitial cystitis malignant pancreatic neoplasm periodontitis sinusitis ulcerative colitis gastric carcinoma cancer exocrine pancreatic carcinoma hepatocellular carcinoma malignant colon neoplasm osteosarcoma Relapse multiple myeloma tuberculosis cutaneous lupus erythematosus gastric cancer interstitial cystitis malignant pancreatic neoplasm periodontitis sinusitis ulcerative colitis cystic fibrosis lung cancer MALT lymphoma plasma cell myeloma Sjogren syndrome
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	: Q9Y275	multiple sclerosis ovarian cancer sarcoidosis systemic lupus erythematosus arthritic joint disease breast cancer cystic fibrosis glioblastoma interstitial cystitis large cell medulloblastoma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma Sjogren syndrome tuberculosis multiple sclerosis ovarian cancer sarcoidosis systemic lupus erythematosus arthritic joint disease breast cancer cystic fibrosis glioblastoma interstitial cystitis large cell medulloblastoma medulloblastoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma Sjogren syndrome tuberculosis astrocytic tumor chronic obstructive pulmonary disease Duchenne muscular dystrophy head and neck cancer invasive ductal breast carcinoma lung carcinoma Mood Disorders osteosarcoma pilocytic astrocytoma subependymal giant cell astrocytoma ulcerative colitis autoimmune disease Crohn disease gastric carcinoma hematologic disease juvenile dermatomyositis malignant glioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.