1MI1
Crystal Structure of the PH-BEACH Domain of Human Neurobeachin
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1mi1a1 | All alpha proteins | BEACH domain | BEACH domain | BEACH domain | BEACH domain of neurobeachin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1mi1a2 | All beta proteins | PH domain-like barrel | PH domain-like | PreBEACH PH-like domain | PH-like domain of neurobeachin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1mi1b1 | All alpha proteins | BEACH domain | BEACH domain | BEACH domain | BEACH domain of neurobeachin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1mi1b2 | All beta proteins | PH domain-like barrel | PH domain-like | PreBEACH PH-like domain | PH-like domain of neurobeachin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | BEACH domain | 8031187 | 4002423 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PreBEACH PH-like domain | 8031189 | 4002719 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | BEACH domain | 8043565 | 3001218 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PH domain-like | 8043567 | 3000134 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | PH domain-like | 8043567 | 3000134 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | BEACH domain | 8043565 | 3001218 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PH_BEACH | e1mi1A1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_BEACH | ECOD (1.6) |
A | Beach | e1mi1A2 | A: alpha arrays | X: BEACH domain (From Topology) | H: BEACH domain (From Topology) | T: BEACH domain | F: Beach | ECOD (1.6) |
B | PH_BEACH | e1mi1B1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_BEACH | ECOD (1.6) |
B | Beach | e1mi1B2 | A: alpha arrays | X: BEACH domain (From Topology) | H: BEACH domain (From Topology) | T: BEACH domain | F: Beach | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
A | 1.10.1540.10 | Mainly Alpha | Orthogonal Bundle | Neurobeachin | Chain: A, domain 1 | CATH (4.3.0) |
B | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
B | 1.10.1540.10 | Mainly Alpha | Orthogonal Bundle | Neurobeachin | Chain: A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02138 | Beige/BEACH domain (Beach) | Beige/BEACH domain | - | Family | |
PF14844 | PH domain associated with Beige/BEACH (PH_BEACH) | PH domain associated with Beige/BEACH | This PH domain is found in proteins containing the Beige/BEACH domain (Pfam:PF02138), it immediately precedes the Beige/BEACH domain [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR046852 | Neurobeachin, alpha-solenoid region | Domain | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR050865 | BEACH Domain-Containing | Family | |
IPR000409 | BEACH domain | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR046851 | Neurobeachin, beta-propeller domain | Domain | |
IPR036372 | BEACH domain superfamily | Homologous Superfamily | |
IPR031570 | Neurobeachin/BDCP, DUF4704 | Domain | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR010508 | Neurobeachin-like, DUF1088 | Domain | |
IPR023362 | PH-BEACH domain | Domain |