1LI7
Crystal Structure of Cysteinyl-tRNA Synthetase with Cysteine Substrate Bound
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DALR_2,tRNA-synt_1g | e1li7A2 | A: alpha bundles | X: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (From Topology) | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (From Topology) | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: DALR_2,tRNA-synt_1g | ECOD (1.6) |
A | tRNA-synt_1g | e1li7A1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1g | ECOD (1.6) |
A | UNK_F_TYPE | e1li7A3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: UNK_F_TYPE | ECOD (1.6) |
B | DALR_2,tRNA-synt_1g | e1li7B1 | A: alpha bundles | X: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (From Topology) | H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (From Topology) | T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | F: DALR_2,tRNA-synt_1g | ECOD (1.6) |
B | tRNA-synt_1g | e1li7B3 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1g | ECOD (1.6) |
B | UNK_F_TYPE | e1li7B2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
A | 1.20.120.640 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | CATH (4.3.0) |
B | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
B | 1.20.120.640 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01406 | tRNA synthetases class I (C) catalytic domain (tRNA-synt_1e) | tRNA synthetases class I (C) catalytic domain | - | Family | |
PF09190 | DALR domain (DALR_2) | DALR domain | This DALR domain is found in cysteinyl-tRNA-synthetases [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032678 | tRNA synthetases class I, catalytic domain | Domain | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily | |
IPR015803 | Cysteine-tRNA ligase | Family | |
IPR015273 | Cysteinyl-tRNA synthetase, class Ia, DALR | Domain | |
IPR009080 | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding | Homologous Superfamily | |
IPR024909 | Cysteinyl-tRNA synthetase/mycothiol ligase | Family |