1DCQ
CRYSTAL STRUCTURE OF THE ARF-GAP DOMAIN AND ANKYRIN REPEATS OF PAPBETA.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1dcqa1 | Alpha and beta proteins (a+b) | beta-hairpin-alpha-hairpin repeat | Ankyrin repeat | Ankyrin repeat | Pyk2-associated protein beta | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d1dcqa2 | Small proteins | ArfGap/RecO-like zinc finger | ArfGap/RecO-like zinc finger | Pyk2-associated protein beta ARF-GAP domain | Pyk2-associated protein beta ARF-GAP domain | house mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Ankyrin repeat | 8004091 | 4000366 | SCOP2 (2022-06-29) |
A | SCOP2 Family | ARF-GAP domain | 8004092 | 4000368 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ankyrin repeat | 8017711 | 3000154 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ArfGap/RecO-like zinc finger | 8004093 | 3000151 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ank_2 | e1dcqA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
A | ArfGap | e1dcqA2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: ArfGap | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.220.150 | Mainly Alpha | Orthogonal Bundle | Annexin V | domain 1 | CATH (4.3.0) |
A | 1.25.40.20 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Ankyrin repeat-containing domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12796 | Ankyrin repeats (3 copies) (Ank_2) | Ankyrin repeats (3 copies) | - | Repeat | |
PF01412 | Putative GTPase activating protein for Arf (ArfGap) | Putative GTPase activating protein for Arf | Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004148 | BAR domain | Domain | |
IPR002110 | Ankyrin repeat | Repeat | |
IPR001849 | Pleckstrin homology domain | Domain | |
IPR036770 | Ankyrin repeat-containing domain superfamily | Homologous Superfamily | |
IPR001452 | SH3 domain | Domain | |
IPR036028 | SH3-like domain superfamily | Homologous Superfamily | |
IPR037844 | ASAP, PH domain | Domain | |
IPR035677 | ASAP2, SH3 domain | Domain | |
IPR027267 | AH/BAR domain superfamily | Homologous Superfamily | |
IPR037278 | ARFGAP/RecO-like zinc finger | Homologous Superfamily | |
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR001164 | Arf GTPase activating protein | Domain | |
IPR043593 | Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein | Family | |
IPR038508 | ArfGAP domain superfamily | Homologous Superfamily |