Mapping the E2 Glycoprotein of Alphaviruses
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| T | d1z8yt1 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral proteases | Viral capsid protein | (Sindbis virus ) [TaxId: 11034 ], | SCOPe (2.08) |
| S | d1z8ys1 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral proteases | Viral capsid protein | (Sindbis virus ) [TaxId: 11034 ], | SCOPe (2.08) |
| R | d1z8yr1 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral proteases | Viral capsid protein | (Sindbis virus ) [TaxId: 11034 ], | SCOPe (2.08) |
| Q | d1z8yq1 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Viral proteases | Viral capsid protein | (Sindbis virus ) [TaxId: 11034 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| T | SCOP2B Superfamily | Trypsin-like serine proteases | 8071561 | 3000114 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Trypsin-like serine proteases | 8071561 | 3000114 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Trypsin-like serine proteases | 8071561 | 3000114 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Trypsin-like serine proteases | 8071561 | 3000114 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| T | Beta-barrel_RND | e1z8yT1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Beta-barrel_RND | ECOD (v295.2) |
| S | Beta-barrel_RND | e1z8yS1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Beta-barrel_RND | ECOD (v295.2) |
| R | Beta-barrel_RND | e1z8yR1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Beta-barrel_RND | ECOD (v295.2) |
| Q | Beta-barrel_RND | e1z8yQ1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Beta-barrel_RND | ECOD (v295.2) |
| O | Flu_M2 | e1z8yO1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Flu_M2 | ECOD (v295.2) |
| M | Flu_M2 | e1z8yM1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Flu_M2 | ECOD (v295.2) |
| K | Flu_M2 | e1z8yK1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Flu_M2 | ECOD (v295.2) |
| I | e1z8yI01 | A: alpha arrays | X: Colicin-A N-terminal domain | H: Colicin-A N-terminal domain | T: Colicin-A N-terminal domain | F: | ECOD (v295.2) | |
| H | CopC | e1z8yH1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CopC | ECOD (v295.2) |
| F | CopC | e1z8yF1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CopC | ECOD (v295.2) |
| D | CopC | e1z8yD1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CopC | ECOD (v295.2) |
| B | CopC | e1z8yB1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CopC | ECOD (v295.2) |
| G | CopC | e1z8yG1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CopC | ECOD (v295.2) |
| E | CopC | e1z8yE1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CopC | ECOD (v295.2) |
| C | CopC | e1z8yC1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CopC | ECOD (v295.2) |
| A | CopC | e1z8yA1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CopC | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain | |
| PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family |