1YID
Crystal structure of tryptophanyl tRNA synthetase II from Deinococcus radiodurans in complex with ATP.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d1yidb_ | Alpha and beta proteins (a/b) | Adenine nucleotide alpha hydrolase-like | Nucleotidylyl transferase | automated matches | automated matches | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
B [auth A] | d1yida_ | Alpha and beta proteins (a/b) | Adenine nucleotide alpha hydrolase-like | Nucleotidylyl transferase | automated matches | automated matches | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
C | d1yidc_ | Alpha and beta proteins (a/b) | Adenine nucleotide alpha hydrolase-like | Nucleotidylyl transferase | automated matches | automated matches | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070103 | 3001541 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Nucleotidylyl transferase | 8070103 | 3001541 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nucleotidylyl transferase | 8070103 | 3001541 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | tRNA-synt_1b | e1yidB1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b | ECOD (1.6) |
B [auth A] | tRNA-synt_1b | e1yidA1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b | ECOD (1.6) |
C | tRNA-synt_1b | e1yidC1 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: tRNA-synt_1b | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
A [auth B] | 1.10.240.10 | Mainly Alpha | Orthogonal Bundle | Tyrosyl-Transfer RNA Synthetase | Tyrosyl-Transfer RNA Synthetase | CATH (4.3.0) |
B [auth A] | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
B [auth A] | 1.10.240.10 | Mainly Alpha | Orthogonal Bundle | Tyrosyl-Transfer RNA Synthetase | Tyrosyl-Transfer RNA Synthetase | CATH (4.3.0) |
C | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
C | 1.10.240.10 | Mainly Alpha | Orthogonal Bundle | Tyrosyl-Transfer RNA Synthetase | Tyrosyl-Transfer RNA Synthetase | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C | IPR050203 | Tryptophan--tRNA ligase | Family |
A [auth B], B [auth A], C | IPR002305 | Aminoacyl-tRNA synthetase, class Ic | Family |
A [auth B], B [auth A], C | IPR001412 | Aminoacyl-tRNA synthetase, class I, conserved site | Conserved Site |
A [auth B], B [auth A], C | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily |
A [auth B], B [auth A], C | IPR002306 | Tryptophan-tRNA ligase | Family |