1YFI
Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | d1yfia_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease MspI | Restriction endonuclease MspI | (Moraxella sp. ) [TaxId: 479 ], | SCOPe (2.08) |
F [auth B] | d1yfib_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease MspI | Restriction endonuclease MspI | (Moraxella sp. ) [TaxId: 479 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | Restriction endonuclease-like | 8039323 | 3000104 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Restriction endonuclease-like | 8039323 | 3000104 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | Endonuc-MspI | e1yfiA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Endonuc-MspI | ECOD (1.6) |
F [auth B] | Endonuc-MspI | e1yfiB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Endonuc-MspI | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B] | PF09208 | Restriction endonuclease MspI (Endonuc-MspI) | Restriction endonuclease MspI | Members of this family of prokaryotic restriction endonucleases recognise the palindromic tetranucleotide sequence 5'-CCGG and cleave between the first and second nucleotides, leaving 2 base 5' overhangs. They fold into an alpha/beta architecture, wi ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
E [auth A], F [auth B] | IPR011335 | Restriction endonuclease type II-like | Homologous Superfamily |
E [auth A], F [auth B] | IPR015291 | Restriction endonuclease, type II, MspI | Family |