1YD6
Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01541 | e1yd6A1 | A: a+b three layers | X: GIY-YIG endonuclease (From Topology) | H: GIY-YIG endonuclease (From Topology) | T: GIY-YIG endonuclease | F: PF01541 | ECOD (1.6) |
B | PF01541 | e1yd6B1 | A: a+b three layers | X: GIY-YIG endonuclease (From Topology) | H: GIY-YIG endonuclease (From Topology) | T: GIY-YIG endonuclease | F: PF01541 | ECOD (1.6) |
C | PF01541 | e1yd6C1 | A: a+b three layers | X: GIY-YIG endonuclease (From Topology) | H: GIY-YIG endonuclease (From Topology) | T: GIY-YIG endonuclease | F: PF01541 | ECOD (1.6) |
D | PF01541 | e1yd6D1 | A: a+b three layers | X: GIY-YIG endonuclease (From Topology) | H: GIY-YIG endonuclease (From Topology) | T: GIY-YIG endonuclease | F: PF01541 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.1440.10 | Alpha Beta | 3-Layer(aba) Sandwich | GIY-YIG endonuclease | GIY-YIG endonuclease | CATH (4.3.0) |
B | 3.40.1440.10 | Alpha Beta | 3-Layer(aba) Sandwich | GIY-YIG endonuclease | GIY-YIG endonuclease | CATH (4.3.0) |
C | 3.40.1440.10 | Alpha Beta | 3-Layer(aba) Sandwich | GIY-YIG endonuclease | GIY-YIG endonuclease | CATH (4.3.0) |
D | 3.40.1440.10 | Alpha Beta | 3-Layer(aba) Sandwich | GIY-YIG endonuclease | GIY-YIG endonuclease | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01541 | GIY-YIG catalytic domain (GIY-YIG) | GIY-YIG catalytic domain | This domain called GIY-YIG is found in the amino terminal region of excinuclease abc subunit c (uvrC), bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004791 | UvrABC system, subunit C | Family | |
IPR036876 | UVR domain superfamily | Homologous Superfamily | |
IPR001162 | UvrC, RNAse H endonuclease domain | Domain | |
IPR010994 | RuvA domain 2-like | Homologous Superfamily | |
IPR038476 | UvrC, RNAse H endonuclease domain superfamily | Homologous Superfamily | |
IPR001943 | UVR domain | Domain | |
IPR047296 | UvrC/Cho-like, GIY-YIG domain | Domain | |
IPR035901 | GIY-YIG endonuclease superfamily | Homologous Superfamily | |
IPR000305 | GIY-YIG endonuclease | Domain |