1YC2 | pdb_00001yc2

Sir2Af2-NAD-ADPribose-nicotinamide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d1yc2e_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Sir2 family of transcriptional regulators	AF0112, Sir2 homolog (Sir2-AF2)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
D	d1yc2d_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Sir2 family of transcriptional regulators	AF0112, Sir2 homolog (Sir2-AF2)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
C	d1yc2c_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Sir2 family of transcriptional regulators	AF0112, Sir2 homolog (Sir2-AF2)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
B	d1yc2b_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Sir2 family of transcriptional regulators	AF0112, Sir2 homolog (Sir2-AF2)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
A	d1yc2a_	Alpha and beta proteins (a/b)	DHS-like NAD/FAD-binding domain	DHS-like NAD/FAD-binding domain	Sir2 family of transcriptional regulators	AF0112, Sir2 homolog (Sir2-AF2)	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	DHS-like NAD/FAD-binding domain	8041444	3001728	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	DHS-like NAD/FAD-binding domain	8041444	3001728	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DHS-like NAD/FAD-binding domain	8041444	3001728	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DHS-like NAD/FAD-binding domain	8041444	3001728	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DHS-like NAD/FAD-binding domain	8041444	3001728	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	RNA_pol_Rpb2_45	e1yc2E2	A: alpha arrays	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: RNA_pol_Rpb2_45	ECOD (v295)
E	DNA_topoisoIV	e1yc2E3	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: DNA_topoisoIV	ECOD (v295)
D	RNA_pol_Rpb2_45	e1yc2D2	A: alpha arrays	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: RNA_pol_Rpb2_45	ECOD (v295)
D	DNA_topoisoIV	e1yc2D1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: DNA_topoisoIV	ECOD (v295)
C	RNA_pol_Rpb2_45	e1yc2C2	A: alpha arrays	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: RNA_pol_Rpb2_45	ECOD (v295)
C	DNA_topoisoIV	e1yc2C1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: DNA_topoisoIV	ECOD (v295)
B	RNA_pol_Rpb2_45	e1yc2B2	A: alpha arrays	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: RNA_pol_Rpb2_45	ECOD (v295)
B	DNA_topoisoIV	e1yc2B1	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: DNA_topoisoIV	ECOD (v295)
A	RNA_pol_Rpb2_45	e1yc2A2	A: alpha arrays	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: RNA_pol_Rpb2_45	ECOD (v295)
A	DNA_topoisoIV	e1yc2A3	A: alpha arrays	X: Alpha-lytic protease prodomain-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: DNA_topoisoIV	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.40.50.1220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	TPP-binding domain	CATH (4.3.0)
E	3.30.1600.10	Alpha Beta	2-Layer Sandwich	SIR2/SIRT2 'Small Domain'	SIR2/SIRT2 'Small Domain'	CATH (4.3.0)
D	3.40.50.1220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	TPP-binding domain	CATH (4.3.0)
D	3.30.1600.10	Alpha Beta	2-Layer Sandwich	SIR2/SIRT2 'Small Domain'	SIR2/SIRT2 'Small Domain'	CATH (4.3.0)
C	3.40.50.1220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	TPP-binding domain	CATH (4.3.0)
C	3.30.1600.10	Alpha Beta	2-Layer Sandwich	SIR2/SIRT2 'Small Domain'	SIR2/SIRT2 'Small Domain'	CATH (4.3.0)
B	3.40.50.1220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	TPP-binding domain	CATH (4.3.0)
B	3.30.1600.10	Alpha Beta	2-Layer Sandwich	SIR2/SIRT2 'Small Domain'	SIR2/SIRT2 'Small Domain'	CATH (4.3.0)
A	3.40.50.1220	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	TPP-binding domain	CATH (4.3.0)
A	3.30.1600.10	Alpha Beta	2-Layer Sandwich	SIR2/SIRT2 'Small Domain'	SIR2/SIRT2 'Small Domain'	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF02146	Sir2 family (SIR2)	Sir2 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	NAD-dependent deacetylase 2	NAD+ binding NAD binding binding nucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding heterocyclic compound binding small molecule binding catalytic activity, acting on a protein acyltransferase activity deacylase activity NAD+ binding NAD binding binding nucleotide binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding heterocyclic compound binding small molecule binding catalytic activity, acting on a protein acyltransferase activity deacylase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity protein-succinyllysine desuccinylase activity NAD-dependent protein lysine deacylase activity deacetylase activity protein lysine deacetylase activity histone deacetylase activity, NAD-dependent histone deacetylase activity NAD-dependent protein lysine deacetylase activity histone modifying activity protein-malonyllysine demalonylase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding transition metal ion binding zinc ion binding metal ion binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR027546	Sirtuin, class III	Family
A, B, C, D, E	IPR026590	Sirtuin family, catalytic core domain	Domain
A, B, C, D, E	IPR050134	NAD-dependent sirtuin protein deacylases	Family
A, B, C, D, E	IPR026591	Sirtuin, catalytic core small domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR003000	Sirtuin family	Family
A, B, C, D, E	IPR029035	DHS-like NAD/FAD-binding domain superfamily	Homologous Superfamily
A, B, C, D, E	IPR028628	Sirtuin, class U	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.