1Y69
RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth K] | d1y69k1 | Alpha and beta proteins (a+b) | alpha/beta-Hammerhead | Ribosomal protein L16p/L10e | Ribosomal protein L16p | Ribosomal protein L16p | (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], | SCOPe (2.08) |
D [auth U] | d1y69u1 | All beta proteins | Barrel-sandwich hybrid | Ribosomal L27 protein-like | Ribosomal L27 protein | Ribosomal protein L27 | (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth K] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8038562 | 3000884 | SCOP2B (2022-06-29) |
D [auth U] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8038582 | 3000539 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth K] | Ribosomal_L16 | e1y69K1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
D [auth U] | Ribosomal_L27 | e1y69U1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
E [auth 8] | RRF | e1y6981 | A: a+b two layers | X: RRF/tRNA synthetase additional domain-like | H: Ribosome recycling factor, RRF (From Topology) | T: Ribosome recycling factor, RRF | F: RRF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth K] | 3.90.1170.10 | Alpha Beta | Alpha-Beta Complex | Aldehyde Oxidoreductase | domain 3 | CATH (4.3.0) |
D [auth U] | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (4.3.0) |
E [auth 8] | 1.10.132.20 | Mainly Alpha | Orthogonal Bundle | Topoisomerase I | Chain A, domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth U] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
E [auth 8] | PF01765 | Ribosome recycling factor (RRF) | Ribosome recycling factor | The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthe ... | Domain |