1Y1M | pdb_00001y1m

Crystal structure of the NR1 ligand binding core in complex with cycloleucine

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1y1mb_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like N-methyl-D-aspartate receptor subunit 1 Norway rat (Rattus norvegicus ) [TaxId: 10116 ], Norway rat (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Ad1y1ma_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like N-methyl-D-aspartate receptor subunit 1 Norway rat (Rattus norvegicus ) [TaxId: 10116 ], Norway rat (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BDctPe1y1mB1 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: DctPECOD (develop294)
ADctPe1y1mA1 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: DctPECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Glutamate [NMDA] receptor subunit zeta 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, B
IPR001828Receptor, ligand binding regionDomain
A, B
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, B
IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
A, B
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, B
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, B
IPR015683Ionotropic glutamate receptorFamily
A, B
IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain