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 1Y0Z | pdb_00001y0z

X-ray structure of gene product from Arabidopsis thaliana At3g21360

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1y0zb_ All beta proteins Double-stranded beta-helix Clavaminate synthase-like gamma-Butyrobetaine hydroxylase Clavaminate synthase-like protein At3g21360 thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], SCOPe (2.08)
Ad1y0za_ All beta proteins Double-stranded beta-helix Clavaminate synthase-like gamma-Butyrobetaine hydroxylase Clavaminate synthase-like protein At3g21360 thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyClavaminate synthase-like 8044245 3001848 SCOP2B (2022-06-29)
ASCOP2 Familygamma-Butyrobetaine hydroxylase 8031867 4003973 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyClavaminate synthase-like 8044245 3001848 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BCopper-binde1y0zB1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Copper-bindECOD (v295.2)
ATauDe1y0zA1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: TauDECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-likeCATH (4.3.0)
A3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02668Taurine catabolism dioxygenase TauD, TfdA family (TauD)Taurine catabolism dioxygenase TauD, TfdA familyThis family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli Swiss:P37610 is a alpha-ketoglutarate-dependent taurine dioxygenase [1]. This enzyme catalyses the oxygenolytic release of sulfite from taurine [1]. ...This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli Swiss:P37610 is a alpha-ketoglutarate-dependent taurine dioxygenase [1]. This enzyme catalyses the oxygenolytic release of sulfite from taurine [1]. TfdA from Burkholderia sp. Swiss:Q45423 is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase [2]. TfdA from Alcaligenes eutrophus JMP134 Swiss:P10088 is a 2,4-dichlorophenoxyacetate monooxygenase [3]. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1 [4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
protein product of AT3G21360 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR003819TauD/TfdA-like domainDomain
A, B
IPR050411Alpha-ketoglutarate-dependent hydroxylase-likeFamily
A, B
IPR042098Glutarate 2-hydroxylase superfamilyHomologous Superfamily