MECHANISM FOR ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE INVOLVING RING OPENING FOLLOWED BY A 1,2-HYDRIDE SHIFT
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d1xldb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | Xylose isomerase | D-xylose isomerase | (Arthrobacter sp. NRRL B3728 ) [TaxId: 1669 ], | SCOPe (2.08) |
| A | d1xlda_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Xylose isomerase-like | Xylose isomerase | D-xylose isomerase | (Arthrobacter sp. NRRL B3728 ) [TaxId: 1669 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | PF27526 | e1xldB1 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: PF27526 | ECOD (v294.1) |
| A | PF27526 | e1xldA1 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: PF27526 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (4.3.0) |
| A | 3.20.20.150 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Divalent-metal-dependent TIM barrel enzymes | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| D-XYLOSE ISOMERASE |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR013022 | Xylose isomerase-like, TIM barrel domain | Domain | |
| IPR013453 | Xylose isomerase, actinobacteria | Family | |
| IPR036237 | Xylose isomerase-like superfamily | Homologous Superfamily | |
| IPR001998 | Xylose isomerase | Family |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| xylose isomerase (actinobacterial) M-CSA #308 | Xylose isomerase catalyses the interconvertion of D-xylose and D-xylulose. It contains two divalent metal ions, preferably magnesium, located at different metal-binding sites within the active site. The enzyme catalyses the interconversion of aldose and ketose sugars with broad substrate specificity. The enzyme binds the closed form of its sugar substrate (in the case of glucose, only the alpha anomer) and catalyses ring opening to generate a form of open-chain conformation that is coordinated to one of the metal sites. | Defined by 11 residues: HIS:A-53ASP:A-56MET:A-87GLU:A-180LYS:A-182GLU:A-216HIS:A-219ASP:A-244ASP:A-254ASP:A-256ASP:A-292 | EC: 5.3.1.5 (PDB Primary Data) |














