1X1L
Interaction of ERA,a GTPase protein, with the 3'minor domain of the 16S rRNA within the THERMUS THERMOPHILUS 30S subunit.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth X] | d1x1lx1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | GTPase Era, N-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B [auth X] | d1x1lx2 | Alpha and beta proteins (a+b) | Alpha-lytic protease prodomain-like | Prokaryotic type KH domain (KH-domain type II) | Prokaryotic type KH domain (KH-domain type II) | GTPase Era C-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth X] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089827 | 3002022 | SCOP2B (2022-06-29) |
B [auth X] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8089829 | 3001043 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth X] | KH_2 | e1x1lX1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2 | ECOD (1.6) |
B [auth X] | MnmE_helical_2nd | e1x1lX2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth X] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
B [auth X] | PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth X] | IPR005225 | Small GTP-binding domain | Domain |
B [auth X] | IPR030388 | Era-type guanine nucleotide-binding (G) domain | Domain |
B [auth X] | IPR009019 | K homology domain superfamily, prokaryotic type | Homologous Superfamily |
B [auth X] | IPR005662 | GTPase Era-like | Family |
B [auth X] | IPR004044 | K Homology domain, type 2 | Domain |
B [auth X] | IPR015946 | K homology domain-like, alpha/beta | Homologous Superfamily |
B [auth X] | IPR006073 | GTP binding domain | Domain |
B [auth X] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |