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 1WMX | pdb_00001wmx

Crystal Structure of Family 30 Carbohydrate Binding Module

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1wmxb_ All beta proteins Galactose-binding domain-like Galactose-binding domain-like Family 30 carbohydrate binding module, CBM30 (PKD repeat) Endoglucanase CelJ (Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ], SCOPe (2.08)
Ad1wmxa_ All beta proteins Galactose-binding domain-like Galactose-binding domain-like Family 30 carbohydrate binding module, CBM30 (PKD repeat) Endoglucanase CelJ (Acetivibrio thermocellus ATCC 27405 ) [TaxId: 203119 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B Superfamilygalactose-binding domain-like 8041770 3000087 SCOP2B (2022-06-29)
ASCOP2 FamilyFamily 30 carbohydrate binding module, cbm30 (pkd repeat) 8029391 4001720 SCOP2 (2022-06-29)
ASCOP2 Superfamilygalactose-binding domain-like 8041770 3000087 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRhve1wmxB1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: RhvECOD (v295.2)
ACBM30e1wmxA1 A: beta sandwichesX: jelly-rollH: Galactose-binding domain-likeT: Galactose-binding domain-likeF: CBM30ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.430 Mainly Beta Sandwich Jelly Rolls Galactose-binding lectinCATH (4.3.0)
A2.60.120.430 Mainly Beta Sandwich Jelly Rolls Galactose-binding lectinCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21582Carbohydrate binding domain 30 (CBM30)Carbohydrate binding domain 30This carbohydrate binding domain is found at the N-terminal end of Glycoside hydrolase family 9 (GH9) from Acetivibrio thermocellus (Swiss:A3DD30). This protein contains GH9 and GH44 as catalytic modules (Pfam:PF00759 and Pfam:PF12891). It also prese ...This carbohydrate binding domain is found at the N-terminal end of Glycoside hydrolase family 9 (GH9) from Acetivibrio thermocellus (Swiss:A3DD30). This protein contains GH9 and GH44 as catalytic modules (Pfam:PF00759 and Pfam:PF12891). It also presents a family 30 carbohydrate binding domain (CBM30), which displays affinity for beta-1,4-glucopolymers and plays a pivotal role in the function of of GH9, a typical processive endoglucanase. This domain adopts a beta-sandwich fold with two five-stranded beta-sheets [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
COG3291: FOG: PKD repeat -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR002105Dockerin type I repeatRepeat
A, B
IPR016134Dockerin domainDomain
A, B
IPR022409PKD/Chitinase domainDomain
A, B
IPR000601PKD domainDomain
A, B
IPR008928Six-hairpin glycosidase superfamilyHomologous Superfamily
A, B
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
A, B
IPR012341Six-hairpin glycosidase-like superfamilyHomologous Superfamily
A, B
IPR048758Carbohydrate binding domain 30Domain
A, B
IPR035986PKD domain superfamilyHomologous Superfamily
A, B
IPR024745Glycoside hydrolase, family 44, catalytic domainDomain
A, B
IPR013783Immunoglobulin-like foldHomologous Superfamily
A, B
IPR014756Immunoglobulin E-setHomologous Superfamily
A, B
IPR001701Glycoside hydrolase family 9Domain
A, B
IPR036439Dockerin domain superfamilyHomologous Superfamily
A, B
IPR013780Glycosyl hydrolase, all-betaHomologous Superfamily
A, B
IPR004197Cellulase, Ig-like domainDomain