1WIR

Solution structure of the C2H2 zinc finger domain of the protein arginine N-methyltransferase 3 from Mus musculus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1wira1	Small proteins	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	variant C2H2 finger	Protein arginine N-methyltransferase 3	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d1wira3	Artifacts	Tags	Tags	Tags	C-terminal Tags	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d1wira2	Artifacts	Tags	Tags	Tags	N-terminal Tags	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	variant C2H2 finger	8031208	4003924	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	beta-beta-alpha zinc fingers	8043586	3001077	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	KOG2482_like	e1wirA2	A: alpha arrays	X: Protein arginine N-methyltransferase 3 helical domain (From Topology)	H: Protein arginine N-methyltransferase 3 helical domain (From Topology)	T: Protein arginine N-methyltransferase 3 helical domain	F: KOG2482_like	ECOD (1.6)
A	zf-C2H2_4_like_3	e1wirA3	A: few secondary structure elements	X: beta-beta-alpha zinc fingers	H: beta-beta-alpha zinc fingers (From Topology)	T: beta-beta-alpha zinc fingers	F: zf-C2H2_4_like_3	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21336	Protein arginine N-methyltransferase 3, C2H2 zinc finger (ANM3_zf-C2H2)	Protein arginine N-methyltransferase 3, C2H2 zinc finger	This entry represents the C2H2-type zinc finger from arginine N-methyltransferase 3 (ANM3). It catalyses both the monomethylation and asymmetric dimethylation of the guanidino nitrogens of arginine residues in target proteins.	Domain
A	PF21137	Protein arginine N-methyltransferase 3, C2H2 zinc finger domain (ANM3_C2H2_Zf)	Protein arginine N-methyltransferase 3, C2H2 zinc finger domain	This is the N-terminal helical domain of protein arginine N-methyltransferase 3 (ANM3/PRMT3) which has a C2H2 zinc finger. ANM3 catalyses both the monomethylation and asymmetric dimethylation of the guanidino nitrogens of arginine residues in target ...	This is the N-terminal helical domain of protein arginine N-methyltransferase 3 (ANM3/PRMT3) which has a C2H2 zinc finger. ANM3 catalyses both the monomethylation and asymmetric dimethylation of the guanidino nitrogens of arginine residues in target proteins and may regulate retinoic acid synthesis and signaling by inhibiting ALDH1A1 retinal dehydrogenase activity [1]. PRMT3 orthologue from fission yeast, is a ribosomal protein that methylates guanidino nitrogens of arginyl residues in ribosomal protein rps2 and may regulate ribosome biosynthesis [2]. This ZnF is required for its optimal enzymatic activity and contributes to substrate specificity [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein arginine N-methyltransferase 3	catalytic activity, acting on a protein transferase activity, transferring one-carbon groups protein methyltransferase activity histone modifying activity transferase activity methyltransferase activity catalytic activity histone methyltransferase activity arginine N-methyltransferase activity N-methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity protein-arginine N-methyltransferase activity protein-arginine omega-N monomethyltransferase activity ribonucleoprotein complex binding catalytic activity, acting on a protein transferase activity, transferring one-carbon groups protein methyltransferase activity histone modifying activity transferase activity methyltransferase activity catalytic activity histone methyltransferase activity arginine N-methyltransferase activity N-methyltransferase activity S-adenosylmethionine-dependent methyltransferase activity protein-arginine N-methyltransferase activity protein-arginine omega-N monomethyltransferase activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding protein-arginine omega-N asymmetric methyltransferase activity cation binding ion binding metal ion binding small molecule binding modified amino acid binding	multicellular organismal process cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cell differentiation multicellular organismal process cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cell differentiation anatomical structure development dendritic spine morphogenesis cellular component organization or biogenesis synapse organization system development developmental process dendritic spine development plasma membrane bounded cell projection organization dendritic spine organization postsynapse organization dendrite morphogenesis nervous system development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis cell junction organization neuron development cellular process neuron projection organization negative regulation of post-translational protein modification regulation of protein modification process negative regulation of biological process regulation of protein ubiquitination regulation of primary metabolic process protein ubiquitination negative regulation of protein modification process protein metabolic process negative regulation of protein ubiquitination regulation of protein modification by small protein conjugation or removal protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biological process negative regulation of protein modification by small protein conjugation or removal regulation of post-translational protein modification regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal protein alkylation methylation protein methylation macromolecule methylation diterpenoid metabolic process regulation of cellular process negative regulation of small molecule metabolic process oxoacid metabolic process regulation of lipid metabolic process organic acid biosynthetic process organic acid metabolic process terpenoid biosynthetic process negative regulation of lipid biosynthetic process negative regulation of cellular metabolic process carboxylic acid biosynthetic process cellular ketone metabolic process regulation of small molecule metabolic process retinoic acid metabolic process small molecule metabolic process regulation of biological quality regulation of vitamin metabolic process regulation of cellular ketone metabolic process regulation of hormone levels cellular metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process negative regulation of vitamin metabolic process retinoic acid biosynthetic process biosynthetic process cellular lipid metabolic process negative regulation of isoprenoid metabolic process regulation of isoprenoid metabolic process monocarboxylic acid metabolic process negative regulation of lipid metabolic process terpenoid metabolic process negative regulation of hormone metabolic process isoprenoid metabolic process cellular biosynthetic process regulation of hormone metabolic process lipid biosynthetic process negative regulation of cellular process regulation of biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process isoprenoid biosynthetic process carboxylic acid metabolic process regulation of retinoic acid biosynthetic process hormone metabolic process vitamin metabolic process regulation of cellular biosynthetic process diterpenoid biosynthetic process negative regulation of retinoic acid biosynthetic process negative regulation of biosynthetic process retinoid metabolic process regulation of lipid biosynthetic process lipid metabolic process chromatin organization chromatin remodeling	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR049482	Protein arginine N-methyltransferase 3-like, C2H2 zinc finger domain	Domain
A	IPR025799	Protein arginine N-methyltransferase	Family
A	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Homologous Superfamily
A	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily
A	IPR049009	Protein arginine N-methyltransferase 3, C2H2 zinc finger	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.