1W3S
The crystal structure of RecO from Deinococcus radiodurans.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042766 | 3000135 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ArfGap/RecO-like zinc finger | 8042768 | 3000151 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ArfGap/RecO-like zinc finger | 8042768 | 3000151 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042766 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | RecO_N | e1w3sB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RecO_N | ECOD (1.6) |
B | RecO_C | e1w3sB2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: RecO_C | ECOD (1.6) |
A | RecO_N | e1w3sA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RecO_N | ECOD (1.6) |
A | RecO_C | e1w3sA2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: RecO_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
B | 1.20.1440.120 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | Recombination protein O, C-terminal domain | CATH (4.3.0) |
B | 6.20.220.20 | Special | Other non-globular | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
A | 1.20.1440.120 | Mainly Alpha | Up-down Bundle | de novo design (two linked rop proteins) | Recombination protein O, C-terminal domain | CATH (4.3.0) |
A | 6.20.220.20 | Special | Other non-globular | Erythroid Transcription Factor GATA-1 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02565 | Recombination protein O C terminal (RecO_C) | Recombination protein O C terminal | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR022572 | DNA replication/recombination mediator RecO, N-terminal | Domain | |
IPR042242 | Recombination protein O, C-terminal | Homologous Superfamily | |
IPR037278 | ARFGAP/RecO-like zinc finger | Homologous Superfamily | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR003717 | Recombination protein O, RecO | Family |