1VRR
Crystal structure of the restriction endonuclease BstYI complex with DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d1vrra_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease BstyI | Restriction endonuclease BstyI | (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
D [auth B] | d1vrrb_ | Alpha and beta proteins (a/b) | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease BstyI | Restriction endonuclease BstyI | (Geobacillus stearothermophilus ) [TaxId: 1422 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | Restriction endonuclease-like | 8043749 | 3000104 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Restriction endonuclease-like | 8043749 | 3000104 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | Endonuc-BglII | e1vrrA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Endonuc-BglII | ECOD (1.6) |
D [auth B] | Endonuc-BglII | e1vrrB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: Endonuc-BglII | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 3.40.91.20 | Alpha Beta | 3-Layer(aba) Sandwich | Restriction Endonuclease | CATH (4.3.0) | |
D [auth B] | 3.40.91.20 | Alpha Beta | 3-Layer(aba) Sandwich | Restriction Endonuclease | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | PF09195 | Restriction endonuclease BglII (Endonuc-BglII) | Restriction endonuclease BglII | Members of this family are predominantly found in prokaryotic restriction endonuclease BglII, and adopt a structure consisting of an alpha/beta core containing a six-stranded beta-sheet surrounded by five alpha-helices, two of which are involved in h ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B] | IPR011335 | Restriction endonuclease type II-like | Homologous Superfamily |
C [auth A], D [auth B] | IPR015278 | Type-2 restriction enzyme BglII | Family |
C [auth A], D [auth B] | IPR011338 | Restriction endonuclease, type II, BamHI/BglIII/BstY | Homologous Superfamily |