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 1VMD | pdb_00001vmd

Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1vmdb1 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase, MgsA Methylglyoxal synthase, MgsA (Thermotoga maritima ) [TaxId: 2336 ], SCOPe (2.08)
Bd1vmdb2 Artifacts Tags Tags Tags N-terminal Tags (Thermotoga maritima ) [TaxId: 2336 ], SCOPe (2.08)
Ad1vmda1 Alpha and beta proteins (a/b) Methylglyoxal synthase-like Methylglyoxal synthase-like Methylglyoxal synthase, MgsA Methylglyoxal synthase, MgsA (Thermotoga maritima ) [TaxId: 2336 ], SCOPe (2.08)
Ad1vmda2 Artifacts Tags Tags Tags N-terminal Tags (Thermotoga maritima ) [TaxId: 2336 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyMethylglyoxal synthase-like 8041528 3001443 SCOP2B (2022-06-29)
ASCOP2 FamilyMethylglyoxal synthase, MgsA 8029149 4003765 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyMethylglyoxal synthase-like 8041528 3001443 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BAbhydrolase_1e1vmdB1 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: Abhydrolase_1ECOD (v295.2)
AAbhydrolase_1e1vmdA1 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: Abhydrolase_1ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.1380 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Methylglyoxal synthase-like domainCATH (4.3.0)
A3.40.50.1380 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Methylglyoxal synthase-like domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02142MGS-like domain (MGS)MGS-like domainThis domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes ino ...This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Methylglyoxal synthase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR018148Methylglyoxal synthase, active siteActive Site
A, B
IPR004363Methylglyoxal synthaseFamily
A, B
IPR011607Methylglyoxal synthase-like domainDomain
A, B
IPR036914Methylglyoxal synthase-like domain superfamilyHomologous Superfamily