STRUCTURE REFINEMENT OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO GIGAS AT 1.28 A
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | CO dehydrogenase ISP C-domain like | 8029062 | 4001010 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | 2Fe-2S ferredoxin domains from multidomain proteins | 8029063 | 4000241 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | CO dehydrogenase molybdoprotein N-domain-like | 8029064 | 4001129 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Molybdenum cofactor-binding domain | 8029066 | 4001972 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | CO dehydrogenase ISP C-domain like | 8041441 | 3000439 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | 2Fe-2S ferredoxin-like | 8041442 | 3000113 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | CO dehydrogenase molybdoprotein N-domain-like | 8041443 | 3000847 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Molybdenum cofactor-binding domain | 8041445 | 3000625 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Fer2_2 | e1vlbA1 | A: alpha bundles | X: CO dehydrogenase ISP C-domain like | H: CO dehydrogenase ISP C-domain like | T: CO dehydrogenase ISP C-domain like | F: Fer2_2 | ECOD (v294.2) |
| A | Ald_Xan_dh_C | e1vlbA4 | A: few secondary structure elements | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: Ald_Xan_dh_C | ECOD (v294.2) |
| A | S4 | e1vlbA3 | A: beta barrels | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: S4 | ECOD (v294.2) |
| A | TPP_enzyme_C | e1vlbA5 | A: beta barrels | X: Insertion domain in tetravirus coat protein | H: Thiamin diphosphate-binding fold (THDP-binding) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: TPP_enzyme_C | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.10.20.30 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Beta-grasp domain | CATH (4.3.0) |
| A | 1.10.150.120 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
| A | 3.90.1170.50 | Alpha Beta | Alpha-Beta Complex | Aldehyde Oxidoreductase | domain 3 | CATH (4.3.0) |
| A | 3.30.365.10 | Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase | domain 4 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| ALDEHYDE OXIDOREDUCTASE |
| - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR054705 | Molybdopterin-dependent aldehyde oxidoreductase | Family | |
| IPR036010 | 2Fe-2S ferredoxin-like superfamily | Homologous Superfamily | |
| IPR000674 | Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead | Domain | |
| IPR001041 | 2Fe-2S ferredoxin-type iron-sulfur binding domain | Domain | |
| IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site | Binding Site | |
| IPR036856 | Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily | Homologous Superfamily | |
| IPR037165 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily | Homologous Superfamily | |
| IPR046867 | Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain | Domain | |
| IPR002888 | [2Fe-2S]-binding | Domain | |
| IPR036884 | [2Fe-2S]-binding domain superfamily | Homologous Superfamily | |
| IPR016208 | Aldehyde oxidase/xanthine dehydrogenase-like | Family | |
| IPR012675 | Beta-grasp domain superfamily | Homologous Superfamily | |
| IPR008274 | Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain | Domain |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| aldehyde dehydrogenase (FAD-independent) M-CSA #105 | The sulfate-reducing bacteria Desulfovibrio gigas synthesises a xanthine oxidase-related molybdenum-iron protein aldehyde oxidoreductase (Mop) which catalyses the oxidation of aldehydes to carboxylic acids. Mop contains two separate [2Fe-2S] clusters, and an Mo ion held by a pterin derivative called molybdopterin cytosine dinucleotide (together called the molybedenum cofactor, Mo-co). | EC: 1.2.3.1 (PDB Primary Data) EC: 1.2.99.7 (UniProt) |














