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 1VKE | pdb_00001vke

Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response (TM1620) from Thermotoga maritima at 1.56 A resolution

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd1vkef_ All alpha proteins AhpD-like AhpD-like CMD-like Hypothetical protein TM1620 (Thermotoga maritima MSB8 ) [TaxId: 243274 ], SCOPe (2.08)
Ed1vkee_ All alpha proteins AhpD-like AhpD-like CMD-like Hypothetical protein TM1620 (Thermotoga maritima MSB8 ) [TaxId: 243274 ], SCOPe (2.08)
Dd1vked_ All alpha proteins AhpD-like AhpD-like CMD-like Hypothetical protein TM1620 (Thermotoga maritima MSB8 ) [TaxId: 243274 ], SCOPe (2.08)
Cd1vkec_ All alpha proteins AhpD-like AhpD-like CMD-like Hypothetical protein TM1620 (Thermotoga maritima MSB8 ) [TaxId: 243274 ], SCOPe (2.08)
Bd1vkeb_ All alpha proteins AhpD-like AhpD-like CMD-like Hypothetical protein TM1620 (Thermotoga maritima MSB8 ) [TaxId: 243274 ], SCOPe (2.08)
Ad1vkea_ All alpha proteins AhpD-like AhpD-like CMD-like Hypothetical protein TM1620 (Thermotoga maritima MSB8 ) [TaxId: 243274 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyAhpD-like 8038413 3001907 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAhpD-like 8038413 3001907 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyAhpD-like 8038413 3001907 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAhpD-like 8038413 3001907 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAhpD-like 8038413 3001907 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAhpD-like 8038413 3001907 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FBcl-2e1vkeF1 A: alpha arraysX: Urease, gamma-subunitH: p53 tetramerization domainT: p53 tetramerization domainF: Bcl-2ECOD (v295.2)
EBcl-2e1vkeE1 A: alpha arraysX: Urease, gamma-subunitH: p53 tetramerization domainT: p53 tetramerization domainF: Bcl-2ECOD (v295.2)
DBcl-2e1vkeD1 A: alpha arraysX: Urease, gamma-subunitH: p53 tetramerization domainT: p53 tetramerization domainF: Bcl-2ECOD (v295.2)
CBcl-2e1vkeC1 A: alpha arraysX: Urease, gamma-subunitH: p53 tetramerization domainT: p53 tetramerization domainF: Bcl-2ECOD (v295.2)
BBcl-2e1vkeB1 A: alpha arraysX: Urease, gamma-subunitH: p53 tetramerization domainT: p53 tetramerization domainF: Bcl-2ECOD (v295.2)
ACMDe1vkeA1 A: alpha arraysX: AhpD-likeH: AhpD-likeT: AhpD-likeF: CMDECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (4.3.0)
E1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (4.3.0)
D1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (4.3.0)
C1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (4.3.0)
B1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (4.3.0)
A1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02627Carboxymuconolactone decarboxylase family (CMD)Carboxymuconolactone decarboxylase family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
carboxymuconolactone decarboxylase family protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR003779Alkyl hydroperoxide reductase AhpD/CMD-likeDomain
A, B, C, D, E
IPR029032AhpD-likeHomologous Superfamily
A, B, C, D, E
IPR004675Alkylhydroperoxidase AhpD coreDomain