1VH0 | pdb_00001vh0

Crystal structure of a hypothetical protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1vh0f1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
F	d1vh0f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
E	d1vh0e1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
E	d1vh0e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
D	d1vh0d1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
D	d1vh0d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
C	d1vh0c1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
C	d1vh0c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
B	d1vh0b1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
B	d1vh0b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
A	d1vh0a1	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein SAV0024/SA0023	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)
A	d1vh0a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus ) [TaxId: 1280 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha/beta knot	8035757	3001122	SCOP2B (2022-06-29)
A	SCOP2 Family	YbeA-like	8023377	4002973	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha/beta knot	8035757	3001122	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	RecU	e1vh0F1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
E	RecU	e1vh0E1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
D	RecU	e1vh0D1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
C	RecU	e1vh0C1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
B	RecU	e1vh0B1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)
A	RecU	e1vh0A1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
E	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
D	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
C	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
B	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
A	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Hypothetical UPF0247 protein SAV0024/SA0023	RNA methyltransferase activity rRNA methyltransferase activity rRNA (pseudouridine-N3-)-methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity rRNA (pseudouridine) methyltransferase activity methyltransferase activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR029028	Alpha/beta knot methyltransferases	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR003742	RNA methyltransferase RlmH	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.