1UPM
ACTIVATED SPINACH RUBISCO COMPLEXED WITH 2-CARBOXYARABINITOL 2 BISPHOSPHAT AND CA2+.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035405 | 3001258 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043674 | 3000552 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043674 | 3000552 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035405 | 3001258 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035405 | 3001258 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043674 | 3000552 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043674 | 3000552 | SCOP2B (2022-06-29) |
G [auth K] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035405 | 3001258 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035405 | 3001258 | SCOP2B (2022-06-29) |
H [auth L] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043674 | 3000552 | SCOP2B (2022-06-29) |
J [auth O] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043674 | 3000552 | SCOP2B (2022-06-29) |
J [auth O] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035405 | 3001258 | SCOP2B (2022-06-29) |
L [auth R] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043674 | 3000552 | SCOP2B (2022-06-29) |
L [auth R] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035405 | 3001258 | SCOP2B (2022-06-29) |
O [auth V] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035405 | 3001258 | SCOP2B (2022-06-29) |
O [auth V] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8043674 | 3000552 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | RuBisCO, small subunit | 8069965 | 3001622 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | RuBisCO, small subunit | 8069965 | 3001622 | SCOP2B (2022-06-29) |
F [auth I] | SCOP2B Superfamily | RuBisCO, small subunit | 8069965 | 3001622 | SCOP2B (2022-06-29) |
I [auth M] | SCOP2B Superfamily | RuBisCO, small subunit | 8069965 | 3001622 | SCOP2B (2022-06-29) |
K [auth P] | SCOP2B Superfamily | RuBisCO, small subunit | 8069965 | 3001622 | SCOP2B (2022-06-29) |
M [auth S] | SCOP2B Superfamily | RuBisCO, small subunit | 8069965 | 3001622 | SCOP2B (2022-06-29) |
N [auth T] | SCOP2B Superfamily | RuBisCO, small subunit | 8069965 | 3001622 | SCOP2B (2022-06-29) |
P [auth W] | SCOP2B Superfamily | RuBisCO, small subunit | 8069965 | 3001622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF02788 | e1upmB1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
A [auth B] | PF00016 | e1upmB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
C [auth E] | PF02788 | e1upmE1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
C [auth E] | PF00016 | e1upmE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
E [auth H] | PF02788 | e1upmH1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
E [auth H] | PF00016 | e1upmH2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
G [auth K] | PF02788 | e1upmK1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
G [auth K] | PF00016 | e1upmK2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
H [auth L] | PF02788 | e1upmL1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
H [auth L] | PF00016 | e1upmL2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
J [auth O] | PF02788 | e1upmO1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
J [auth O] | PF00016 | e1upmO2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
L [auth R] | PF02788 | e1upmR1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
L [auth R] | PF00016 | e1upmR2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
O [auth V] | PF02788 | e1upmV1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: PF02788 | ECOD (1.6) |
O [auth V] | PF00016 | e1upmV2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
B [auth C] | PF00101 | e1upmC1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
D [auth F] | PF00101 | e1upmF1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
F [auth I] | PF00101 | e1upmI1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
I [auth M] | PF00101 | e1upmM1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
K [auth P] | PF00101 | e1upmP1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
M [auth S] | PF00101 | e1upmS1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
N [auth T] | PF00101 | e1upmT1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
P [auth W] | PF00101 | e1upmW1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: PF00101 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain | |
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain | |
PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
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RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN |
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RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN |
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