1U7H
Structure and a Proposed Mechanism for Ornithine Cyclodeaminase from Pseudomonas putida
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1u7ha_ | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | Ornithine cyclodeaminase-like | Ornithine cyclodeaminase | (Pseudomonas putida ) [TaxId: 303 ], | SCOPe (2.08) |
B | d1u7hb_ | Alpha and beta proteins (a/b) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | Ornithine cyclodeaminase-like | Ornithine cyclodeaminase | (Pseudomonas putida ) [TaxId: 303 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02423 | e1u7hA1 | A: a+b two layers | X: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | H: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | T: Ornithine cyclodeaminase-like enzymes dimerization domain | F: PF02423 | ECOD (1.6) |
A | PF02423 | e1u7hA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF02423 | ECOD (1.6) |
B | PF02423 | e1u7hB1 | A: a+b two layers | X: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | H: Ornithine cyclodeaminase-like enzymes dimerization domain (From Topology) | T: Ornithine cyclodeaminase-like enzymes dimerization domain | F: PF02423 | ECOD (1.6) |
B | PF02423 | e1u7hB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF02423 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1780.10 | Alpha Beta | 2-Layer Sandwich | ornithine cyclodeaminase, domain 1 | ornithine cyclodeaminase, domain 1 | CATH (4.3.0) |
A | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
B | 3.30.1780.10 | Alpha Beta | 2-Layer Sandwich | ornithine cyclodeaminase, domain 1 | ornithine cyclodeaminase, domain 1 | CATH (4.3.0) |
B | 3.40.50.720 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NAD(P)-binding Rossmann-like Domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02423 | Ornithine cyclodeaminase/mu-crystallin family (OCD_Mu_crystall) | Ornithine cyclodeaminase/mu-crystallin family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR003462 | Ornithine cyclodeaminase/mu-crystallin | Family | |
IPR023401 | Ornithine cyclodeaminase, N-terminal | Homologous Superfamily |