1U5S
NMR structure of the complex between Nck-2 SH3 domain and PINCH-1 LIM4 domain
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d1u5sb1 | Small proteins | Glucocorticoid receptor-like (DNA-binding domain) | Glucocorticoid receptor-like (DNA-binding domain) | LIM domain | Pinch (particularly interesting new Cys-His) protein | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1u5sb3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1u5sa1 | All beta proteins | SH3-like barrel | SH3-domain | SH3-domain | Nck-2 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | LIM domain | 8020430 | 4003634 | SCOP2 (2022-06-29) |
B | SCOP2 Family | LIM domain | 8020433 | 4003634 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8032810 | 3000068 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8032813 | 3000068 | SCOP2 (2022-06-29) |
A | SCOP2 Family | SH3-domain | 8019967 | 4000369 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | SH3-domain | 8032347 | 3000153 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | LIM_C | e1u5sB2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: LIM_C | ECOD (1.6) |
B | LIM_N_2 | e1u5sB1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: LIM_N_2 | ECOD (1.6) |
A | SH3_1 | e1u5sA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: SH3_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.10.110.10 | Mainly Beta | Ribbon | Cysteine Rich Protein | Cysteine Rich Protein | CATH (4.3.0) |
A | 2.30.30.40 | Mainly Beta | Roll | SH3 type barrels. | SH3 Domains | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00412 | LIM domain (LIM) | LIM domain | This family represents two copies of the LIM structural domain. | Domain | |
PF00018 | SH3 domain (SH3_1) | SH3 domain | SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR047944 | LIMS1/2-like, LIM domain 1 | Domain | |
IPR047946 | LIM and senescent cell antigen-like-containing domain protein 1/2-like | Family | |
IPR001781 | Zinc finger, LIM-type | Domain | |
IPR035559 | Nck2, SH3 domain 1 | Domain | |
IPR036860 | SH2 domain superfamily | Homologous Superfamily | |
IPR035560 | Nck2, SH3 domain 2 | Domain | |
IPR000980 | SH2 domain | Domain | |
IPR035883 | Nck2, SH2 domain | Domain | |
IPR036028 | SH3-like domain superfamily | Homologous Superfamily | |
IPR035561 | Nck2, SH3 domain 3 | Domain | |
IPR051184 | Tyrosine-phosphorylated adapter molecule | Family | |
IPR001452 | SH3 domain | Domain | |
IPR017304 | Cytoplasmic protein NCK | Family |