1TMQ
STRUCTURE OF TENEBRIO MOLITOR LARVAL ALPHA-AMYLASE IN COMPLEX WITH RAGI BIFUNCTIONAL INHIBITOR
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1tmqa1 | All beta proteins | Glycosyl hydrolase domain | Glycosyl hydrolase domain | alpha-Amylases, C-terminal beta-sheet domain | Animal alpha-amylase | (Tenebrio molitor ) [TaxId: 7067 ], | SCOPe (2.08) |
A | d1tmqa2 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | Amylase, catalytic domain | Animal alpha-amylase | (Tenebrio molitor ) [TaxId: 7067 ], | SCOPe (2.08) |
B | d1tmqb_ | All alpha proteins | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | Proteinase/alpha-amylase inhibitors | Trypsin/alpha-amylase inhibitor RBI | (Eleusine coracana ) [TaxId: 4511 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8042902 | 3001528 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | (Trans)glycosidases | 8043329 | 3000313 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 8037621 | 3000401 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Alpha-amylase_C | e1tmqA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C | ECOD (1.6) |
A | Alpha-amylase | e1tmqA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
B | Tryp_alpha_amyl | e1tmqB1 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA | T: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | F: Tryp_alpha_amyl | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
B | 1.10.110.10 | Mainly Alpha | Orthogonal Bundle | Hydrophobic Seed Protein | Plant lipid-transfer and hydrophobic proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00128 | Alpha amylase, catalytic domain (Alpha-amylase) | Alpha amylase, catalytic domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain | |
PF02806 | Alpha amylase, C-terminal all-beta domain (Alpha-amylase_C) | Alpha amylase, C-terminal all-beta domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain | |
PF00234 | Protease inhibitor/seed storage/LTP family (Tryp_alpha_amyl) | Protease inhibitor/seed storage/LTP family | This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
PROTEIN (ALPHA-AMYLASE) | ||||
PROTEIN (RAGI BIFUNCTIONAL INHIBITOR) |
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