1TE0
Structural analysis of DegS, a stress sensor of the bacterial periplasm
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1te0a1 | All beta proteins | PDZ domain-like | PDZ domain-like | HtrA-like serine proteases | Stress sensor protease DegS, C-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1te0a2 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Prokaryotic proteases | Stress sensor protease DegS, catalytic domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1te0b1 | All beta proteins | PDZ domain-like | PDZ domain-like | HtrA-like serine proteases | Stress sensor protease DegS, C-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1te0b2 | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Prokaryotic proteases | Stress sensor protease DegS, catalytic domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | HtrA-like serine proteases | 8030076 | 4002154 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Prokaryotic proteases | 8030079 | 4002151 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PDZ domain-like | 8042455 | 3000388 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Trypsin-like serine proteases | 8042458 | 3000114 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Trypsin-like serine proteases | 8042458 | 3000114 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PDZ domain-like | 8042455 | 3000388 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Trypsin_2 | e1te0A3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Trypsin_2 | ECOD (1.6) |
A | PDZ_2 | e1te0A4 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ_2 | ECOD (1.6) |
B | Trypsin_2 | e1te0B3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Trypsin_2 | ECOD (1.6) |
B | PDZ_2 | e1te0B4 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PDZ_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
A | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
B | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
B | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00089 | Trypsin (Trypsin) | Trypsin | - | Domain | |
PF00595 | PDZ domain (PDZ) | PDZ domain | PDZ domains are found in diverse signaling proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009003 | Peptidase S1, PA clan | Homologous Superfamily | |
IPR001940 | Peptidase S1C | Family | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR011783 | Peptidase S1C, DegS | Family | |
IPR001478 | PDZ domain | Domain | |
IPR043504 | Peptidase S1, PA clan, chymotrypsin-like fold | Homologous Superfamily |