1TDH
Crystal structure of human endonuclease VIII-like 1 (NEIL1)
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1tdha1 | All alpha proteins | S13-like H2TH domain | S13-like H2TH domain | Middle domain of MutM-like DNA repair proteins | Endonuclease VIII-like 1 (NEIL1) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1tdha2 | All beta proteins | N-terminal domain of MutM-like DNA repair proteins | N-terminal domain of MutM-like DNA repair proteins | N-terminal domain of MutM-like DNA repair proteins | Endonuclease VIII-like 1 (NEIL1) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1tdha3 | Small proteins | Glucocorticoid receptor-like (DNA-binding domain) | Glucocorticoid receptor-like (DNA-binding domain) | C-terminal, Zn-finger domain of MutM-like DNA repair proteins | Endonuclease VIII-like 1 (NEIL1) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Fpg (MutM)-like | 8044631 | 4000303 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | FPG N-terminal domain-like | 8056357 | 3000074 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | S13-like H2TH domain | 8044632 | 3000053 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8044633 | 3000068 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01149 | e1tdhA1 | A: beta barrels | X: MutM N-terminal domain-like | H: N-terminal domain of MutM-like DNA repair proteins (From Topology) | T: N-terminal domain of MutM-like DNA repair proteins | F: PF01149 | ECOD (1.6) |
A | PF06831 | e1tdhA2 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF06831 | ECOD (1.6) |
A | PF09292 | e1tdhA3 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: C-terminal, Zn-finger domain of MutM-like DNA repair proteins (From Topology) | T: C-terminal, Zn-finger domain of MutM-like DNA repair proteins | F: PF09292 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.190.10 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | MutM-like, N-terminal | CATH (4.3.0) |
A | 1.10.8.50 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09292 | Endonuclease VIII-like 1, DNA bind (Neil1-DNA_bind) | Endonuclease VIII-like 1, DNA bind | Members of this family are predominantly found in Endonuclease VIII-like 1 and adopt a glucocorticoid receptor-like fold. They allow for DNA binding [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035937 | MutM-like, N-terminal | Homologous Superfamily | |
IPR012319 | Formamidopyrimidine-DNA glycosylase, catalytic domain | Domain | |
IPR015371 | Endonuclease VIII-like 1, DNA binding | Domain | |
IPR015886 | DNA glycosylase/AP lyase, H2TH DNA-binding | Domain | |
IPR010979 | Small ribosomal subunit protein uS13-like, H2TH | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
Q96FI4 | :