1T61
crystal structure of collagen IV NC1 domain from placenta basement membrane
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Noncollagenous (NC1) domain of collagen IV | 8027621 | 4002828 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Noncollagenous (NC1) domain of collagen IV | 8027622 | 4002828 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | C-type lectin-like | 8040001 | 3001261 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | C-type lectin-like | 8040000 | 3001261 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | C4 | e1t61A1 | A: a+b complex topology | X: Noncollagenous (NC1) domain of collagen IV (From Topology) | H: Noncollagenous (NC1) domain of collagen IV (From Topology) | T: Noncollagenous (NC1) domain of collagen IV | F: C4 | ECOD (1.6) |
B | C4 | e1t61B1 | A: a+b complex topology | X: Noncollagenous (NC1) domain of collagen IV (From Topology) | H: Noncollagenous (NC1) domain of collagen IV (From Topology) | T: Noncollagenous (NC1) domain of collagen IV | F: C4 | ECOD (1.6) |
D | C4 | e1t61D1 | A: a+b complex topology | X: Noncollagenous (NC1) domain of collagen IV (From Topology) | H: Noncollagenous (NC1) domain of collagen IV (From Topology) | T: Noncollagenous (NC1) domain of collagen IV | F: C4 | ECOD (1.6) |
E | C4 | e1t61E1 | A: a+b complex topology | X: Noncollagenous (NC1) domain of collagen IV (From Topology) | H: Noncollagenous (NC1) domain of collagen IV (From Topology) | T: Noncollagenous (NC1) domain of collagen IV | F: C4 | ECOD (1.6) |
C | C4 | e1t61C3 | A: a+b complex topology | X: Noncollagenous (NC1) domain of collagen IV (From Topology) | H: Noncollagenous (NC1) domain of collagen IV (From Topology) | T: Noncollagenous (NC1) domain of collagen IV | F: C4 | ECOD (1.6) |
F | C4 | e1t61F1 | A: a+b complex topology | X: Noncollagenous (NC1) domain of collagen IV (From Topology) | H: Noncollagenous (NC1) domain of collagen IV (From Topology) | T: Noncollagenous (NC1) domain of collagen IV | F: C4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.170.240.10 | Mainly Beta | Beta Complex | Noncollagenous (NC1) domain of collagen IV | Collagen IV, non-collagenous | CATH (4.3.0) |
B | 2.170.240.10 | Mainly Beta | Beta Complex | Noncollagenous (NC1) domain of collagen IV | Collagen IV, non-collagenous | CATH (4.3.0) |
D | 2.170.240.10 | Mainly Beta | Beta Complex | Noncollagenous (NC1) domain of collagen IV | Collagen IV, non-collagenous | CATH (4.3.0) |
E | 2.170.240.10 | Mainly Beta | Beta Complex | Noncollagenous (NC1) domain of collagen IV | Collagen IV, non-collagenous | CATH (4.3.0) |
C | 2.170.240.10 | Mainly Beta | Beta Complex | Noncollagenous (NC1) domain of collagen IV | Collagen IV, non-collagenous | CATH (4.3.0) |
F | 2.170.240.10 | Mainly Beta | Beta Complex | Noncollagenous (NC1) domain of collagen IV | Collagen IV, non-collagenous | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01413 | C-terminal tandem repeated domain in type 4 procollagen (C4) | C-terminal tandem repeated domain in type 4 procollagen | Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome. | Domain | |
PF01413 | C-terminal tandem repeated domain in type 4 procollagen (C4) | C-terminal tandem repeated domain in type 4 procollagen | Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Type IV Collagen | ||||
Type IV Collagen | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008160 | Collagen triple helix repeat | Repeat | |
IPR036954 | Collagen IV, non-collagenous domain superfamily | Homologous Superfamily | |
IPR050149 | Collagen superfamily | Family | |
IPR016187 | C-type lectin fold | Homologous Superfamily | |
IPR001442 | Collagen IV, non-collagenous | Domain | |
IPR036954 | Collagen IV, non-collagenous domain superfamily | Homologous Superfamily | |
IPR016187 | C-type lectin fold | Homologous Superfamily | |
IPR001442 | Collagen IV, non-collagenous | Domain | |
IPR019326 | Protein NDNF | Family |