1SYX
The crystal structure of a binary U5 snRNP complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Thioredoxin-like | 8044390 | 3000031 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Thioredoxin-like | 8044390 | 3000031 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Thioredoxin-like | 8044390 | 3000031 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2 Family | GYF domain-like | 8020034 | 4001496 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2 Superfamily | GYF domain-like | 8032414 | 3001702 | SCOP2 (2022-06-29) |
E [auth D] | SCOP2B Superfamily | GYF domain-like | 8032414 | 3001702 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | GYF domain-like | 8032414 | 3001702 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DIM1 | e1syxA1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: DIM1 | ECOD (1.6) |
B [auth C] | DIM1 | e1syxC1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: DIM1 | ECOD (1.6) |
C [auth E] | DIM1 | e1syxE1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: DIM1 | ECOD (1.6) |
D [auth B] | GYF | e1syxB1 | A: a+b two layers | X: GYF/BRK domain-like | H: GYF domain (From Topology) | T: GYF domain | F: GYF | ECOD (1.6) |
E [auth D] | GYF | e1syxD1 | A: a+b two layers | X: GYF/BRK domain-like | H: GYF domain (From Topology) | T: GYF domain | F: GYF | ECOD (1.6) |
F | GYF | e1syxF1 | A: a+b two layers | X: GYF/BRK domain-like | H: GYF domain (From Topology) | T: GYF domain | F: GYF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
B [auth C] | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
C [auth E] | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (4.3.0) |
D [auth B] | 3.30.1490.40 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
E [auth D] | 3.30.1490.40 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
F | 3.30.1490.40 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth E] | PF02966 | Mitosis protein DIM1 (DIM1) | Mitosis protein DIM1 | - | Domain |
D [auth B], E [auth D], F | PF02213 | GYF domain (GYF) | GYF domain | The GYF domain is named because of the presence of Gly-Tyr-Phe residues. The GYF domain is a proline-binding domain in CD2-binding protein Swiss:O95400. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C], C [auth E] | IPR004123 | Dim1 family | Family |
A, B [auth C], C [auth E] | IPR036249 | Thioredoxin-like superfamily | Homologous Superfamily |
D [auth B], E [auth D], F | IPR003169 | GYF domain | Domain |
D [auth B], E [auth D], F | IPR035445 | GYF-like domain superfamily | Homologous Superfamily |
D [auth B], E [auth D], F | IPR039905 | CD2 antigen cytoplasmic tail-binding protein 2/Lin1 | Family |