1SI7
Structure of E. coli tRNA psi 13 pseudouridine synthase TruD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1si7a_ | Alpha and beta proteins (a+b) | Pseudouridine synthase | Pseudouridine synthase | tRNA pseudouridine synthase TruD | tRNA pseudouridine synthase TruD | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TruD_1st | e1si7A1 | A: a+b two layers | X: Alpha-beta plaits | H: Pseudouridine synthase (From Topology) | T: Pseudouridine synthase | F: TruD_1st | ECOD (1.6) |
A | TruD_2nd | e1si7A2 | A: a+b two layers | X: tRNA pseudouridine synthase TruD insertion domain (From Topology) | H: tRNA pseudouridine synthase TruD insertion domain (From Topology) | T: tRNA pseudouridine synthase TruD insertion domain | F: TruD_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.2350.20 | Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | TruD, catalytic domain | CATH (4.3.0) |
A | 3.30.2340.10 | Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | TruD, insertion domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01142 | tRNA pseudouridine synthase D (TruD) (TruD) | tRNA pseudouridine synthase D (TruD) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050170 | tRNA pseudouridine synthase D | Family | |
IPR020103 | Pseudouridine synthase, catalytic domain superfamily | Homologous Superfamily | |
IPR001656 | Pseudouridine synthase, TruD | Family | |
IPR042214 | Pseudouridine synthase, TruD, catalytic domain | Homologous Superfamily | |
IPR020119 | Pseudouridine synthase TruD, conserved site | Conserved Site | |
IPR043165 | Pseudouridine synthase, TruD, insertion domain superfamily | Homologous Superfamily | |
IPR011760 | Pseudouridine synthase, TruD, insertion domain | Domain |