1SDY
STRUCTURE SOLUTION AND MOLECULAR DYNAMICS REFINEMENT OF THE YEAST CU,ZN ENZYME SUPEROXIDE DISMUTASE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1sdya_ | All beta proteins | Immunoglobulin-like beta-sandwich | Cu,Zn superoxide dismutase-like | Cu,Zn superoxide dismutase-like | Cu,Zn superoxide dismutase, SOD | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
B | d1sdyb_ | All beta proteins | Immunoglobulin-like beta-sandwich | Cu,Zn superoxide dismutase-like | Cu,Zn superoxide dismutase-like | Cu,Zn superoxide dismutase, SOD | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
C | d1sdyc_ | All beta proteins | Immunoglobulin-like beta-sandwich | Cu,Zn superoxide dismutase-like | Cu,Zn superoxide dismutase-like | Cu,Zn superoxide dismutase, SOD | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
D | d1sdyd_ | All beta proteins | Immunoglobulin-like beta-sandwich | Cu,Zn superoxide dismutase-like | Cu,Zn superoxide dismutase-like | Cu,Zn superoxide dismutase, SOD | baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cu Zn superoxide dismutase-like | 8055259 | 3002059 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Cu Zn superoxide dismutase-like | 8055259 | 3002059 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Cu Zn superoxide dismutase-like | 8055259 | 3002059 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Cu Zn superoxide dismutase-like | 8055259 | 3002059 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00080 | e1sdyA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Cu,Zn superoxide dismutase-like | F: PF00080 | ECOD (1.6) |
B | PF00080 | e1sdyB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Cu,Zn superoxide dismutase-like | F: PF00080 | ECOD (1.6) |
C | PF00080 | e1sdyC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Cu,Zn superoxide dismutase-like | F: PF00080 | ECOD (1.6) |
D | PF00080 | e1sdyD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Cu,Zn superoxide dismutase-like | F: PF00080 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.200 | Mainly Beta | Sandwich | Immunoglobulin-like | Superoxide dismutase, copper/zinc binding domain | CATH (4.3.0) |
B | 2.60.40.200 | Mainly Beta | Sandwich | Immunoglobulin-like | Superoxide dismutase, copper/zinc binding domain | CATH (4.3.0) |
C | 2.60.40.200 | Mainly Beta | Sandwich | Immunoglobulin-like | Superoxide dismutase, copper/zinc binding domain | CATH (4.3.0) |
D | 2.60.40.200 | Mainly Beta | Sandwich | Immunoglobulin-like | Superoxide dismutase, copper/zinc binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00080 | Copper/zinc superoxide dismutase (SODC) (Sod_Cu) | Copper/zinc superoxide dismutase (SODC) | superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SO ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR024134 | Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone | Family | |
IPR001424 | Superoxide dismutase, copper/zinc binding domain | Domain | |
IPR036423 | Superoxide dismutase-like, copper/zinc binding domain superfamily | Homologous Superfamily | |
IPR018152 | Superoxide dismutase, copper/zinc, binding site | Binding Site |