Annotations: 1RWT

Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d1rwtj_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
I	d1rwti_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
H	d1rwth_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
G	d1rwtg_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
F	d1rwtf_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
E	d1rwte_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
D	d1rwtd_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
C	d1rwtc_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
B	d1rwtb_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
A	d1rwta_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
A	SCOP2 Family	Chlorophyll a-b binding protein	8028673	4001763	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Ion_trans_2	e1rwtJ1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
I	Ion_trans_2	e1rwtI1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
H	Ion_trans_2	e1rwtH1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
G	Ion_trans_2	e1rwtG1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
F	Ion_trans_2	e1rwtF1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
E	Ion_trans_2	e1rwtE1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
D	Ion_trans_2	e1rwtD1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
C	Ion_trans_2	e1rwtC1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
B	Ion_trans_2	e1rwtB1	A: alpha arrays	X: Urease, gamma-subunit	H: Urease, gamma-subunit	T: Urease, gamma-subunit	F: Ion_trans_2	ECOD (v295.2)
A	Chloroa_b-bind	e1rwtA1	A: extended segments	X: Chlorophyll a-b binding protein	H: Chlorophyll a-b binding protein	T: Chlorophyll a-b binding protein	F: Chloroa_b-bind	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
I	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
H	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
G	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
F	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
E	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
D	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
C	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
B	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
A	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF00504	Chlorophyll A-B binding protein (Chloroa_b-bind)	Chlorophyll A-B binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Chlorophyll A-B binding protein, chloroplast	-	photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR022796	Chlorophyll A-B binding protein	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	OPM	Transmembrane	Alpha-helical polytopic	Photosystems	Light-harvesting complexes from chloroplasts

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Light-Harvesting Complexes	Light-Harvesting Complex LHC-II, Spinach Photosystem II