1RJ2
Crystal structure of the DH/PH fragment of Dbs without bound GTPase
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PH domain-like | 8040858 | 3000134 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040856 | 3000793 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | PH domain-like | 8040858 | 3000134 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040856 | 3000793 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040856 | 3000793 | SCOP2B (2022-06-29) |
D [auth J] | SCOP2B Superfamily | PH domain-like | 8040858 | 3000134 | SCOP2B (2022-06-29) |
D [auth J] | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040856 | 3000793 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PH_10 | e1rj2A1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_10 | ECOD (1.6) |
A | RhoGEF | e1rj2A2 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
B [auth D] | PH_10 | e1rj2D1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_10 | ECOD (1.6) |
B [auth D] | RhoGEF | e1rj2D2 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
C [auth G] | PH_10 | e1rj2G4 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_10 | ECOD (1.6) |
C [auth G] | RhoGEF | e1rj2G3 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
D [auth J] | PH_10 | e1rj2J1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_10 | ECOD (1.6) |
D [auth J] | RhoGEF | e1rj2J2 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.900.10 | Mainly Alpha | Up-down Bundle | Dbl Homology Domain | Chain A | CATH (4.3.0) |
A | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
B [auth D] | 1.20.900.10 | Mainly Alpha | Up-down Bundle | Dbl Homology Domain | Chain A | CATH (4.3.0) |
B [auth D] | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
C [auth G] | 1.20.900.10 | Mainly Alpha | Up-down Bundle | Dbl Homology Domain | Chain A | CATH (4.3.0) |
C [auth G] | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
D [auth J] | 1.20.900.10 | Mainly Alpha | Up-down Bundle | Dbl Homology Domain | Chain A | CATH (4.3.0) |
D [auth J] | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth D], C [auth G], D [auth J] | PF22697 | SOS1/NGEF-like PH domain (SOS1_NGEF_PH) | SOS1/NGEF-like PH domain | This is a PH domain found in a diverse group of animal proteins such as Ephexin-1, SOS1 from human and related RhoGEFs [1-5]. | Domain |
A, B [auth D], C [auth G], D [auth J] | PF00621 | RhoGEF domain (RhoGEF) | RhoGEF domain | Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that Pfam:PF00169 domains invariably occur C-terminal to RhoGEF/DH domains. | Domain |