Crystal structure of E. coli Se-MET protein YDDE
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d1qy9b1 | Alpha and beta proteins (a+b) | Diaminopimelate epimerase-like | Diaminopimelate epimerase-like | PhzC/PhzF-like | Hypothetical protein YddE | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
| D | d1qy9d1 | Alpha and beta proteins (a+b) | Diaminopimelate epimerase-like | Diaminopimelate epimerase-like | PhzC/PhzF-like | Hypothetical protein YddE | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
| C | d1qy9c1 | Alpha and beta proteins (a+b) | Diaminopimelate epimerase-like | Diaminopimelate epimerase-like | PhzC/PhzF-like | Hypothetical protein YddE | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
| A | d1qy9a1 | Alpha and beta proteins (a+b) | Diaminopimelate epimerase-like | Diaminopimelate epimerase-like | PhzC/PhzF-like | Hypothetical protein YddE | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Diaminopimelate epimerase-like | 8038613 | 3000573 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Diaminopimelate epimerase-like | 8038612 | 3000573 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Diaminopimelate epimerase-like | 8038612 | 3000573 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Diaminopimelate epimerase-like | 8038613 | 3000573 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Diaminopimelate epimerase-like | 8038613 | 3000573 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Diaminopimelate epimerase-like | 8038612 | 3000573 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | PhzC/PhzF-like | 8026233 | 4000604 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | PhzC/PhzF-like | 8026234 | 4000604 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Diaminopimelate epimerase-like | 8038612 | 3000573 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Diaminopimelate epimerase-like | 8038613 | 3000573 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | RNA_pol_Rpb2_2 | e1qy9B1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RNA_pol_Rpb2_2 | ECOD (v295.2) |
| D | RNA_pol_Rpb2_2 | e1qy9D1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RNA_pol_Rpb2_2 | ECOD (v295.2) |
| C | RNA_pol_Rpb2_2 | e1qy9C1 | A: alpha arrays | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: RNA_pol_Rpb2_2 | ECOD (v295.2) |
| A | PhzC-PhzF | e1qy9A1 | A: few secondary structure elements | X: Diaminopimelate epimerase-like | H: Diaminopimelate epimerase-like | T: Diaminopimelate epimerase-like | F: PhzC-PhzF | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.10.310.10 | Alpha Beta | Roll | Diaminopimelate Epimerase | Chain A, domain 1 | CATH (4.3.0) |
| D | 3.10.310.10 | Alpha Beta | Roll | Diaminopimelate Epimerase | Chain A, domain 1 | CATH (4.3.0) |
| C | 3.10.310.10 | Alpha Beta | Roll | Diaminopimelate Epimerase | Chain A, domain 1 | CATH (4.3.0) |
| A | 3.10.310.10 | Alpha Beta | Roll | Diaminopimelate Epimerase | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02567 | Phenazine biosynthesis-like protein (PhzC-PhzF) | Phenazine biosynthesis-like protein | - | Family | |
| PF02567 | Phenazine biosynthesis-like protein (PhzC-PhzF) | Phenazine biosynthesis-like protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Uncharacterized isomerase YddE | - | - | ||
| Uncharacterized isomerase YddE | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR003719 | Phenazine biosynthesis PhzF-like | Family | |
| IPR003719 | Phenazine biosynthesis PhzF-like | Family |