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 1QW9 | pdb_00001qw9

Crystal structure of a family 51 alpha-L-arabinofuranosidase in complex with 4-nitrophenyl-Ara

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1qw9b1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Alpha-l-arabinofuranosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Bd1qw9b2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Alpha-L-arabinofuranosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Ad1qw9a1 All beta proteins Glycosyl hydrolase domain Glycosyl hydrolase domain Composite domain of glycosyl hydrolase families 5, 30, 39 and 51 Alpha-l-arabinofuranosidase (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)
Ad1qw9a2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases Alpha-L-arabinofuranosidase, catalytic domain (Geobacillus stearothermophilus ) [TaxId: 1422 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8040030 3001528 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8040030 3001528 SCOP2B (2022-06-29)
BSCOP2B Superfamily(Trans)glycosidases 8040032 3000313 SCOP2B (2022-06-29)
ASCOP2 FamilyComposite domain of various glycosyl hydrolase families 8027651 4003957 SCOP2 (2022-06-29)
ASCOP2 Familybeta-glycanases 8027653 4003164 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyGlycosyl hydrolase domain-like 8040030 3001528 SCOP2 (2022-06-29)
ASCOP2 Superfamily(Trans)glycosidases 8040032 3000313 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BLdl_recept_be1qw9B1 A: alpha arraysX: Phage tail fiber protein trimerization domainH: Phage tail fiber protein trimerization domainT: Phage tail fiber protein trimerization domainF: Ldl_recept_bECOD (v295.2)
BNAD_binding_3e1qw9B2 A: alpha arraysX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: C-terminal subdomain in Lon-related proteases catalytic domainsF: NAD_binding_3ECOD (v295.2)
AAlpha-L-AF_Ce1qw9A1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: Alpha-L-AF_CECOD (v295.2)
AAlpha-L-arabinofuranosidase C-terminal domain / Alpha-L-arabinofuranosidase 1 domaine1qw9A2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: Alpha-L-arabinofuranosidase C-terminal domain / Alpha-L-arabinofuranosidase 1 domainECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
B3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
A2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Alpha-L-arabinofuranosidase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR055235Alpha-L-arabinofuranosidase 1, catalytic domainDomain
A, B
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B
IPR013780Glycosyl hydrolase, all-betaHomologous Superfamily
A, B
IPR010720Alpha-L-arabinofuranosidase, C-terminalDomain