1QRV
CRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d1qrva_ | All alpha proteins | HMG-box | HMG-box | HMG-box | HMG-D | fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
D [auth B] | d1qrvb_ | All alpha proteins | HMG-box | HMG-box | HMG-box | HMG-D | fruit fly (Drosophila melanogaster ) [TaxId: 7227 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2 Family | HMG-box | 8024390 | 4000788 | SCOP2 (2022-06-29) |
C [auth A] | SCOP2 Superfamily | HMG-box | 8036769 | 3001368 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2B Superfamily | HMG-box | 8036769 | 3001368 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | HMG_box | e1qrvA1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
D [auth B] | HMG_box | e1qrvB1 | A: alpha arrays | X: HMG-box (From Topology) | H: HMG-box (From Topology) | T: HMG-box | F: HMG_box | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
D [auth B] | 1.10.30.10 | Mainly Alpha | Orthogonal Bundle | DNA Binding (I), subunit A | High mobility group box domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], D [auth B] | PF00505 | HMG (high mobility group) box (HMG_box) | HMG (high mobility group) box | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth C], B [auth D] | DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') | - | - | - |
C [auth A], D [auth B] | HIGH MOBILITY GROUP PROTEIN D |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], D [auth B] | IPR050342 | High Mobility Group Box (HMGB) | Family |
C [auth A], D [auth B] | IPR009071 | High mobility group box domain | Domain |
C [auth A], D [auth B] | IPR036910 | High mobility group box domain superfamily | Homologous Superfamily |