Annotations: 1QDB

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1qdba_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Cytochrome c nitrite reductase	(Sulfurospirillum deleyianum ) [TaxId: 65553 ],	SCOPe (2.08)
B	d1qdbb_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Cytochrome c nitrite reductase	(Sulfurospirillum deleyianum ) [TaxId: 65553 ],	SCOPe (2.08)
C	d1qdbc_	All alpha proteins	Multiheme cytochromes	Multiheme cytochromes	Di-heme elbow motif	Cytochrome c nitrite reductase	(Sulfurospirillum deleyianum ) [TaxId: 65553 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	HAO/Nir-like	8056481	4000358	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HAO C-terminal domain-like	8056483	3002349	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Di-heme elbow motif	8056482	3000145	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Di-heme elbow motif	8056482	3000145	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HAO C-terminal domain-like	8056483	3002349	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HAO C-terminal domain-like	8056483	3002349	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Di-heme elbow motif	8056482	3000145	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cytochrom_C552	e1qdbA1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_C552	ECOD (1.6)
B	Cytochrom_C552	e1qdbB1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_C552	ECOD (1.6)
C	Cytochrom_C552	e1qdbC1	A: few secondary structure elements	X: Multiheme cytochromes	H: Di-heme elbow motif (From Topology)	T: Di-heme elbow motif	F: Cytochrom_C552	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)
A	1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A	domain 3	CATH (4.3.0)
B	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)
B	1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A	domain 3	CATH (4.3.0)
C	1.10.1130.10	Mainly Alpha	Orthogonal Bundle	Flavocytochrome C3	Chain A, domain 2	CATH (4.3.0)
C	1.20.140.10	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF02335	Cytochrome c552 (Cytochrom_C552)	Cytochrome c552	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	CYTOCHROME C NITRITE REDUCTASE	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor oxidoreductase activity nitrite reductase (cytochrome, ammonia-forming) activity oxidoreductase activity, acting on other nitrogenous compounds as donors nitrite reductase activity catalytic activity organic cyclic compound binding tetrapyrrole binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor oxidoreductase activity nitrite reductase (cytochrome, ammonia-forming) activity oxidoreductase activity, acting on other nitrogenous compounds as donors nitrite reductase activity catalytic activity organic cyclic compound binding tetrapyrrole binding heme binding	nitrate assimilation nitrogen cycle metabolic process oxoacid metabolic process cellular metabolic process metabolic process small molecule metabolic process cellular process organic acid metabolic process nitrate metabolic process reactive nitrogen species metabolic process anaerobic electron transport chain cellular respiration energy derivation by oxidation of organic compounds respiratory electron transport chain nitrate assimilation nitrogen cycle metabolic process oxoacid metabolic process cellular metabolic process metabolic process small molecule metabolic process cellular process organic acid metabolic process nitrate metabolic process reactive nitrogen species metabolic process anaerobic electron transport chain cellular respiration energy derivation by oxidation of organic compounds respiratory electron transport chain electron transport chain generation of precursor metabolites and energy anaerobic respiration	outer membrane-bounded periplasmic space cell envelope periplasmic space cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR017570	Formate-dependent cytochrome c nitrite reductase, c552 subunit	Family
A, B, C	IPR036280	Multiheme cytochrome superfamily	Homologous Superfamily
A, B, C	IPR003321	Cytochrome c552	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.