1Q0M
Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after full x-ray-induced reduction
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Nickel-containing superoxide dismutase NiSOD | 8038385 | 3001167 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Nickel-containing superoxide dismutase NiSOD | 8038385 | 3001167 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Nickel-containing superoxide dismutase NiSOD | 8038385 | 3001167 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Nickel-containing superoxide dismutase NiSOD | 8038385 | 3001167 | SCOP2B (2021-05-27) |
E | SCOP2B Superfamily | Nickel-containing superoxide dismutase NiSOD | 8038385 | 3001167 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Nickel-containing superoxide dismutase NiSOD | 8038385 | 3001167 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF09055 | e1q0mA1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Nickel-containing superoxide dismutase, NiSOD (From Topology) | T: Nickel-containing superoxide dismutase, NiSOD | F: PF09055 | ECOD (1.6) |
B | PF09055 | e1q0mB1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Nickel-containing superoxide dismutase, NiSOD (From Topology) | T: Nickel-containing superoxide dismutase, NiSOD | F: PF09055 | ECOD (1.6) |
C | PF09055 | e1q0mC1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Nickel-containing superoxide dismutase, NiSOD (From Topology) | T: Nickel-containing superoxide dismutase, NiSOD | F: PF09055 | ECOD (1.6) |
D | PF09055 | e1q0mD1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Nickel-containing superoxide dismutase, NiSOD (From Topology) | T: Nickel-containing superoxide dismutase, NiSOD | F: PF09055 | ECOD (1.6) |
E | PF09055 | e1q0mE1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Nickel-containing superoxide dismutase, NiSOD (From Topology) | T: Nickel-containing superoxide dismutase, NiSOD | F: PF09055 | ECOD (1.6) |
F | PF09055 | e1q0mF1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Nickel-containing superoxide dismutase, NiSOD (From Topology) | T: Nickel-containing superoxide dismutase, NiSOD | F: PF09055 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.400 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Nickel-containing superoxide dismutase | CATH (4.3.0) |
B | 1.20.120.400 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Nickel-containing superoxide dismutase | CATH (4.3.0) |
C | 1.20.120.400 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Nickel-containing superoxide dismutase | CATH (4.3.0) |
D | 1.20.120.400 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Nickel-containing superoxide dismutase | CATH (4.3.0) |
E | 1.20.120.400 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Nickel-containing superoxide dismutase | CATH (4.3.0) |
F | 1.20.120.400 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Nickel-containing superoxide dismutase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09055 | Nickel-containing superoxide dismutase (Sod_Ni) | Nickel-containing superoxide dismutase | Nickel containing superoxide dismutase (NiSOD) is a metalloenzyme containing a hexameric assembly of right-handed 4-helix bundles of up-down-up-down topology with an N-terminal His-Cys-X-X-Pro-Cys-Gly-X-Tyr motif that chelates the active site Ni ions ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Superoxide dismutase [Ni] | - |