1PFO
PERFRINGOLYSIN O
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1pfoa2 | All beta proteins | Perfringolysin C-terminal-like | Perfringolysin C-terminal-like | Perfringolysin C-terminal-like | Perfringolysin C-terminal domain | (Clostridium perfringens ) [TaxId: 1502 ], | SCOPe (2.08) |
A | d1pfoa1 | Membrane and cell surface proteins and peptides | Perfringolysin N-terminal-like | Perfringolysin N-terminal-like | Perfringolysin N-terminal-like | Perfringolysin N-terminal domain | (Clostridium perfringens ) [TaxId: 1502 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Perfringolysin-like | 8025576 | 4003121 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MAC/CDC-like | 8052018 | 3002081 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CDC membrane-sensing domain-like | 8037955 | 3000285 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Thiol_cytolys_C | e1pfoA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Perfringolysin O beta sandwich domain (From Topology) | T: Perfringolysin O beta sandwich domain | F: Thiol_cytolys_C | ECOD (1.6) |
A | Thiol_cytolysin | e1pfoA3 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: Thiol_cytolysin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.840.10 | Alpha Beta | Alpha-Beta Complex | HIV-1 Reverse Transcriptase | Chain A, domain 3 | CATH (4.3.0) |
A | 3.30.1040.20 | Alpha Beta | 2-Layer Sandwich | Carboxypeptidase Inhibitor | Chain A | CATH (4.3.0) |
A | 3.40.30.40 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Perfringolysin | CATH (4.3.0) |
A | 2.60.40.1430 | Mainly Beta | Sandwich | Immunoglobulin-like | Perfringolysin, domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17440 | Thiol-activated cytolysin beta sandwich domain (Thiol_cytolys_C) | Thiol-activated cytolysin beta sandwich domain | This domain has an immunoglobulin like fold. It is found at the C-terminus of the thiol-activated cytolsin protein. | Domain | |
PF01289 | Thiol-activated cytolysin (Thiol_cytolysin) | Thiol-activated cytolysin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
PERFRINGOLYSIN O |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038700 | Thiol-activated cytolysin, C-terminal domain superfamily | Homologous Superfamily | |
IPR036359 | Thiol-activated cytolysin superfamily | Homologous Superfamily | |
IPR035390 | Thiol-activated cytolysin C-terminal | Domain | |
IPR001869 | Thiol-activated cytolysin | Family | |
IPR036363 | Thiol-activated cytolysin, alpha-beta domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | All beta monotopic/peripheral | Cholesterol-dependent cytolysin | Thiol-activated cytolysin |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes | Perfringolysin O (PFO) protomer |