1PED | pdb_00001ped

BACTERIAL SECONDARY ALCOHOL DEHYDROGENASE (APO-FORM)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1peda1	All beta proteins	GroES-like	GroES-like	Alcohol dehydrogenase-like, N-terminal domain	Bacterial secondary alcohol dehydrogenase	(Clostridium beijerinckii ) [TaxId: 1520 ],	SCOPe (2.08)
A	d1peda2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Alcohol dehydrogenase-like, C-terminal domain	Bacterial secondary alcohol dehydrogenase	(Clostridium beijerinckii ) [TaxId: 1520 ],	SCOPe (2.08)
B	d1pedb1	All beta proteins	GroES-like	GroES-like	Alcohol dehydrogenase-like, N-terminal domain	Bacterial secondary alcohol dehydrogenase	(Clostridium beijerinckii ) [TaxId: 1520 ],	SCOPe (2.08)
B	d1pedb2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Alcohol dehydrogenase-like, C-terminal domain	Bacterial secondary alcohol dehydrogenase	(Clostridium beijerinckii ) [TaxId: 1520 ],	SCOPe (2.08)
C	d1pedc1	All beta proteins	GroES-like	GroES-like	Alcohol dehydrogenase-like, N-terminal domain	Bacterial secondary alcohol dehydrogenase	(Clostridium beijerinckii ) [TaxId: 1520 ],	SCOPe (2.08)
C	d1pedc2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Alcohol dehydrogenase-like, C-terminal domain	Bacterial secondary alcohol dehydrogenase	(Clostridium beijerinckii ) [TaxId: 1520 ],	SCOPe (2.08)
D	d1pedd1	All beta proteins	GroES-like	GroES-like	Alcohol dehydrogenase-like, N-terminal domain	Bacterial secondary alcohol dehydrogenase	(Clostridium beijerinckii ) [TaxId: 1520 ],	SCOPe (2.08)
D	d1pedd2	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Alcohol dehydrogenase-like, C-terminal domain	Bacterial secondary alcohol dehydrogenase	(Clostridium beijerinckii ) [TaxId: 1520 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Zinc-containing alcohol dehydrogenase-like	8057642	3000040	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroES-like	8057641	3000002	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroES-like	8057641	3000002	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Zinc-containing alcohol dehydrogenase-like	8057642	3000040	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroES-like	8057641	3000002	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Zinc-containing alcohol dehydrogenase-like	8057642	3000040	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Zinc-containing alcohol dehydrogenase-like	8057642	3000040	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroES-like	8057641	3000002	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Cpn10	e1pedA1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.2)
A	KR	e1pedA2	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
B	Cpn10	e1pedB1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.2)
B	KR	e1pedB2	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
C	Cpn10	e1pedC1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.2)
C	KR	e1pedC2	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)
D	Cpn10	e1pedD1	A: beta barrels	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.2)
D	KR	e1pedD2	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.180.10	Alpha Beta	Alpha-Beta Complex	Quinone Oxidoreductase	Chain A, domain 1	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.90.180.10	Alpha Beta	Alpha-Beta Complex	Quinone Oxidoreductase	Chain A, domain 1	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.90.180.10	Alpha Beta	Alpha-Beta Complex	Quinone Oxidoreductase	Chain A, domain 1	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.90.180.10	Alpha Beta	Alpha-Beta Complex	Quinone Oxidoreductase	Chain A, domain 1	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	NADP-DEPENDENT ALCOHOL DEHYDROGENASE	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity isopropanol dehydrogenase (NADP+) activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002328	Alcohol dehydrogenase, zinc-type, conserved site	Conserved Site
A, B, C, D	IPR013154	Alcohol dehydrogenase-like, N-terminal	Domain
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR011032	GroES-like superfamily	Homologous Superfamily
A, B, C, D	IPR013149	Alcohol dehydrogenase-like, C-terminal	Domain
A, B, C, D	IPR020843	Enoylreductase domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.