THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COMPLEXED WITH MALONATE FROM BRADYRHIZOBIUM JAPONICUM
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1ocla_ | Alpha and beta proteins (a/b) | Amidase signature (AS) enzymes | Amidase signature (AS) enzymes | Amidase signature (AS) enzymes | Malonamidase E2 | (Bradyrhizobium japonicum ) [TaxId: 375 ], | SCOPe (2.08) |
| B | d1oclb_ | Alpha and beta proteins (a/b) | Amidase signature (AS) enzymes | Amidase signature (AS) enzymes | Amidase signature (AS) enzymes | Malonamidase E2 | (Bradyrhizobium japonicum ) [TaxId: 375 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Pribosyltran | e1oclA1 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: Pribosyltran | ECOD (v294.1) |
| B | Pribosyltran | e1oclB1 | A: a/b three-layered sandwiches | X: HTH | H: HTH | T: winged helix domain | F: Pribosyltran | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.90.1300.10 | Alpha Beta | Alpha-Beta Complex | Amidase signature (AS) enzymes | Amidase signature (AS) domain | CATH (4.3.0) |
| B | 3.90.1300.10 | Alpha Beta | Alpha-Beta Complex | Amidase signature (AS) enzymes | Amidase signature (AS) domain | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| MALONAMIDASE E2 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
| Chains | Enzyme Name | Description | Catalytic Residues |
|---|---|---|---|
| peptide amidase M-CSA #726 | Peptide amidase (PAM) from Strenotrophomonas maltophilia (a gram-negative bacterium) catalyses the hydrolysis of the C-terminal amide bond in peptide amides. It is very regio-selective, and those terminal bonds in amino acid side chains are not hydrolysed. PAM belongs to the amidase signature (AS) family, most of which display hydrolase activity. The natural function of periplasmatic PAM is not known. | Defined by 8 residues: LYS:A-62SER:A-131THR:A-150THR:A-152GLY:A-153GLY:A-154SER:A-155ARG:A-158 | |
