1NZB
Crystal structure of wild type Cre recombinase-loxP synapse
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | DNA breaking-rejoining enzymes | 8040148 | 3001127 | SCOP2B (2022-06-29) |
H [auth F] | SCOP2B Superfamily | lambda integrase clamp domain-like | 8040147 | 3000550 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | INT_Cre_C | e1nzbA2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
E [auth A] | Phage_integrase_N | e1nzbA1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
E [auth A] | Phage_int_SAM_4 | e1nzbA3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
G [auth E] | INT_Cre_C | e1nzbE2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
G [auth E] | Phage_integrase_N | e1nzbE1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
G [auth E] | Phage_int_SAM_4 | e1nzbE3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
F [auth B] | INT_Cre_C | e1nzbB2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
F [auth B] | Phage_integrase_N | e1nzbB1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
F [auth B] | Phage_int_SAM_4 | e1nzbB3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
H [auth F] | INT_Cre_C | e1nzbF2 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: INT_Cre_C | ECOD (1.6) |
H [auth F] | Phage_integrase_N | e1nzbF1 | A: alpha arrays | X: HTH | H: HTH | T: DNA breaking-rejoining enzymes | F: Phage_integrase_N | ECOD (1.6) |
H [auth F] | Phage_int_SAM_4 | e1nzbF3 | A: alpha arrays | X: lambda integrase-N-like | H: lambda integrase-N (From Topology) | T: lambda integrase-N | F: Phage_int_SAM_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
E [auth A] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
G [auth E] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
G [auth E] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
F [auth B] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
F [auth B] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
H [auth F] | 1.10.443.10 | Mainly Alpha | Orthogonal Bundle | hpI Integrase | Chain A | CATH (4.3.0) |
H [auth F] | 1.10.150.130 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B], G [auth E], H [auth F] | PF00589 | Phage integrase family (Phage_integrase) | Phage integrase family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
E [auth A], F [auth B], G [auth E], H [auth F] | Cre recombinase | - | ||
A [auth C], C [auth G] | loxP DNA | - | - | - |
B [auth D], D [auth H] | loxP DNA | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
E [auth A], F [auth B], G [auth E], H [auth F] | IPR011010 | DNA breaking-rejoining enzyme, catalytic core | Homologous Superfamily |
E [auth A], F [auth B], G [auth E], H [auth F] | IPR010998 | Integrase/recombinase, N-terminal | Homologous Superfamily |
E [auth A], F [auth B], G [auth E], H [auth F] | IPR052925 | Phage Integrase-like Recombinase | Family |
E [auth A], F [auth B], G [auth E], H [auth F] | IPR044068 | Core-binding (CB) domain | Domain |
E [auth A], F [auth B], G [auth E], H [auth F] | IPR002104 | Integrase, catalytic domain | Domain |
E [auth A], F [auth B], G [auth E], H [auth F] | IPR013762 | Integrase-like, catalytic domain superfamily | Homologous Superfamily |