1NMA
N9 NEURAMINIDASE COMPLEXES WITH ANTIBODIES NC41 AND NC10: EMPIRICAL FREE-ENERGY CALCULATIONS CAPTURE SPECIFICITY TRENDS OBSERVED WITH MUTANT BINDING DATA
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth N] | d1nman_ | All beta proteins | 6-bladed beta-propeller | Sialidases | Sialidases (neuraminidases) | Influenza neuraminidase | (Influenza A virus ) [TaxId: 11320 ], | SCOPe (2.08) |
B [auth L] | d1nmal_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | Immunoglobulin light chain kappa variable domain, VL-kappa | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
C [auth H] | d1nmah_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | Immunoglobulin heavy chain variable domain, VH | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth N] | SCOP2B Superfamily | Sialidases | 8071652 | 3001607 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth N] | PF00064 | e1nmaN1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF00064 | ECOD (1.6) |
B [auth L] | PF07686 | e1nmaL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth H] | PF07686 | e1nmaH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth N] | 2.120.10.10 | Mainly Beta | 6 Propeller | Neuraminidase | CATH (4.3.0) | |
B [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth L] | NC10 | V-KAPPA | Mus musculus (house mouse) | IGKV10-96*01, IGKV10-96*02, IGKJ1*02 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202428-2) |
C [auth H] | NC10 | VH | Mus musculus (house mouse) | IGHV1-12*01, IGHV1S26*01, IGHJ2*01 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202428-2) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth L] | Light Chain | IGKV10 | Kappa | n9 neuraminidase | SAbDab (2024-07-12) |
C [auth H] | Heavy Chain | IGHV1 | - | n9 neuraminidase | SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth N] | PF00064 | Neuraminidase (Neur) | Neuraminidase | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth N] | IPR001860 | Glycoside hydrolase, family 34 | Family |
A [auth N] | IPR033654 | Sialidase, Influenza viruses A/B | Domain |
A [auth N] | IPR036278 | Sialidase superfamily | Homologous Superfamily |