1NKK
COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Herpes virus serine proteinase, assemblin | 8033924 | 3001295 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Herpes virus serine proteinase, assemblin | 8033924 | 3001295 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Herpes virus serine proteinase, assemblin | 8033924 | 3001295 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Herpes virus serine proteinase, assemblin | 8033924 | 3001295 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_S21 | e1nkkA1 | A: beta barrels | X: Herpes virus serine proteinase, assemblin (From Topology) | H: Herpes virus serine proteinase, assemblin (From Topology) | T: Herpes virus serine proteinase, assemblin | F: Peptidase_S21 | ECOD (1.6) |
C | Peptidase_S21 | e1nkkC1 | A: beta barrels | X: Herpes virus serine proteinase, assemblin (From Topology) | H: Herpes virus serine proteinase, assemblin (From Topology) | T: Herpes virus serine proteinase, assemblin | F: Peptidase_S21 | ECOD (1.6) |
D | Peptidase_S21 | e1nkkD1 | A: beta barrels | X: Herpes virus serine proteinase, assemblin (From Topology) | H: Herpes virus serine proteinase, assemblin (From Topology) | T: Herpes virus serine proteinase, assemblin | F: Peptidase_S21 | ECOD (1.6) |
B | Peptidase_S21 | e1nkkB1 | A: beta barrels | X: Herpes virus serine proteinase, assemblin (From Topology) | H: Herpes virus serine proteinase, assemblin (From Topology) | T: Herpes virus serine proteinase, assemblin | F: Peptidase_S21 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.16.10 | Alpha Beta | Alpha-Beta Barrel | Serine Protease, Human Cytomegalovirus Protease | Chain A | CATH (4.3.0) |
C | 3.20.16.10 | Alpha Beta | Alpha-Beta Barrel | Serine Protease, Human Cytomegalovirus Protease | Chain A | CATH (4.3.0) |
D | 3.20.16.10 | Alpha Beta | Alpha-Beta Barrel | Serine Protease, Human Cytomegalovirus Protease | Chain A | CATH (4.3.0) |
B | 3.20.16.10 | Alpha Beta | Alpha-Beta Barrel | Serine Protease, Human Cytomegalovirus Protease | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | :  |
CFT | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 | :  |
DMH | Parent Component: ASN :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0311 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , N4,N4-dimethyl-L-asparagine MOD:00316 | |
DMK | Parent Component: ASP :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0311 |