1NBW | pdb_00001nbw

Glycerol dehydratase reactivase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1nbwd_	Alpha and beta proteins (a/b)	Anticodon-binding domain-like	B12-dependent dehydatase associated subunit	Dehydratase-reactivating factor beta subunit	Glycerol dehydratase reactivase, beta subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
B	d1nbwb_	Alpha and beta proteins (a/b)	Anticodon-binding domain-like	B12-dependent dehydatase associated subunit	Dehydratase-reactivating factor beta subunit	Glycerol dehydratase reactivase, beta subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
C	d1nbwc1	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	Swiveling domain of dehydratase reactivase alpha subunit	Swiveling domain of dehydratase reactivase alpha subunit	Swiveling domain of the glycerol dehydratase reactivase alpha subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
C	d1nbwc2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	ATPase domain of dehydratase reactivase alpha subunit	ATPase domain of the glycerol dehydratase reactivase alpha subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
A	d1nbwa1	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	Swiveling domain of dehydratase reactivase alpha subunit	Swiveling domain of dehydratase reactivase alpha subunit	Swiveling domain of the glycerol dehydratase reactivase alpha subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)
A	d1nbwa2	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	ATPase domain of dehydratase reactivase alpha subunit	ATPase domain of the glycerol dehydratase reactivase alpha subunit	(Klebsiella pneumoniae ) [TaxId: 573 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	B12-dependent dehydatase associated subunit	8043750	3000491	SCOP2B (2022-06-29)
B	SCOP2 Family	Dehydratase-reactivating factor beta subunit	8031372	4003029	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	B12-dependent dehydatase associated subunit	8043750	3000491	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8043746	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8043748	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Swiveling domain of dehydratase reactivase alpha subunit	8043743	3001885	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8043746	3000092	SCOP2B (2022-06-29)
A	SCOP2 Family	Swiveling domain of dehydratase reactivase alpha subunit	8031365	4002911	SCOP2 (2022-06-29)
A	SCOP2 Family	ATPase domain of dehydratase reactivase alpha subunit	8031368	4003040	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Swiveling domain of dehydratase reactivase alpha subunit	8043743	3001885	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Actin-like ATPases	8043746	3000092	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Actin-like ATPases	8043748	3000092	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Pribosyltran	e1nbwD1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Pribosyltran	ECOD (v294.2)
B	Dehydratase_MU	e1nbwB1	A: beta barrels	X: B12-dependent dehydratase associated subunit	H: B12-dependent dehydratase associated subunit	T: B12-dependent dehydratase associated subunit	F: Dehydratase_MU	ECOD (v294.2)
C	Hexokinase_2	e1nbwC1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Hexokinase_2	ECOD (v294.2)
C	Glyco_hydro_20b	e1nbwC3	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Glyco_hydro_20b	ECOD (v294.2)
A	Hexokinase_2	e1nbwA1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Hexokinase_2	ECOD (v294.2)
A	Glyco_hydro_20b	e1nbwA3	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: Glyco_hydro_20b	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.10150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	B12-dependent dehydatase associated subunit	CATH (4.3.0)
B	3.40.50.10150	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	B12-dependent dehydatase associated subunit	CATH (4.3.0)
C	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
C	3.90.470.30	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22	Chain A	CATH (4.3.0)
C	3.50.30.70	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
C	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)
A	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
A	3.90.470.30	Alpha Beta	Alpha-Beta Complex	Ribosomal Protein L22	Chain A	CATH (4.3.0)
A	3.50.30.70	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (4.3.0)
A	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	GLYCEROL DEHYDRATASE REACTIVASE BETA SUBUNIT	cation binding ion binding binding metal ion binding small molecule binding	-	-
A, C	GLYCEROL DEHYDRATASE REACTIVASE ALPHA SUBUNIT	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding glycerol dehydratase activity hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR009192	Diol/glycerol dehydratase reactivating factor, small subunit	Family
B, D	IPR003208	Diol/glycerol dehydratase/dehydratase reactivating factor	Family
B, D	IPR010254	B12-dependent dehydratases, beta subunit	Homologous Superfamily
A, C	IPR028975	Diol dehydratase-reactivating factor, alpha subunit, swiveling domain superfamily	Homologous Superfamily
A, C	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A, C	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, C	IPR009191	Diol dehydratase-reactivating factor large subunit	Family
A, C	IPR030994	Diol dehydratase reactivase ATPase-like domain	Domain
A, C	IPR040916	DD-reactivating factor swiveling domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.